| Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-12-13 11:07:11 -0500 (Tue, 13 Dec 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4506 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" | 4284 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4313 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TraRe package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TraRe.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2083/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Jesus de la Fuente Cedeño
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK |  | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: TraRe |
| Version: 1.6.3 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:TraRe.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings TraRe_1.6.3.tar.gz |
| StartedAt: 2022-12-12 23:59:52 -0500 (Mon, 12 Dec 2022) |
| EndedAt: 2022-12-12 23:59:58 -0500 (Mon, 12 Dec 2022) |
| EllapsedTime: 5.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: TraRe.Rcheck |
| Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:TraRe.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings TraRe_1.6.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/TraRe.Rcheck’ * using R version 4.2.2 (2022-10-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘TraRe/DESCRIPTION’ ... OK * this is package ‘TraRe’ version ‘1.6.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TraRe’ can be installed ... ERROR Installation failed. See ‘/home/biocbuild/bbs-3.16-bioc/meat/TraRe.Rcheck/00install.out’ for details. * DONE Status: 1 ERROR See ‘/home/biocbuild/bbs-3.16-bioc/meat/TraRe.Rcheck/00check.log’ for details.
TraRe.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL TraRe ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’ * installing *source* package ‘TraRe’ ... ** using staged installation ** libs gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o TraRe.so RegisterDynamicSymbol.o vbsr.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR /usr/bin/ld: RegisterDynamicSymbol.o:RegisterDynamicSymbol.c:(.text+0x1a): undefined reference to `R_registerRoutines' /usr/bin/ld: RegisterDynamicSymbol.o:RegisterDynamicSymbol.c:(.text+0x2c): undefined reference to `R_useDynamicSymbols' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xa5): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xb3): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xc2): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xd3): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xe4): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xf5): more undefined references to `malloc' follow /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2e8): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2fd): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x312): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x327): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x33c): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x351): more undefined references to `free' follow /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x40a): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x456): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x47f): undefined reference to `dnrm2_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x4b9): undefined reference to `dscal_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x52c): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x565): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x57f): undefined reference to `dnrm2_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x5ba): undefined reference to `dscal_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x5e1): undefined reference to `sqrt' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x661): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x68b): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x6d7): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x6f1): undefined reference to `dnrm2_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x724): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x73e): undefined reference to `dnrm2_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x765): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x7a1): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x7ce): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x829): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x8c5): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x9c6): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xab0): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xac3): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xb25): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xb38): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xc2c): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0xc69): more undefined references to `malloc' follow /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1302): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1312): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1330): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1343): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1395): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x13a6): more undefined references to `free' follow /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x17da): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x181c): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1893): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x18ac): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x192e): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1984): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1a70): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1a91): undefined reference to `exp' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1ae1): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1af6): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1b79): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1b8e): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1ba7): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1c94): more undefined references to `log' follow /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1d53): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1e0b): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1e7b): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1e9c): undefined reference to `exp' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1eef): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1f04): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1f7e): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1f93): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1fac): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2004): undefined reference to `sqrt' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2024): undefined reference to `sqrt' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x214b): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2182): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x21de): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2228): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2312): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x238b): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x23e2): undefined reference to `sqrt' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x23f1): undefined reference to `sqrt' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2493): undefined reference to `exp' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x258e): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x25b4): undefined reference to `R_finite' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x25d0): undefined reference to `Rf_error' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x25e4): undefined reference to `Rf_error' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2663): undefined reference to `exp' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2746): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x275f): undefined reference to `R_finite' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x276f): undefined reference to `Rf_error' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x277b): undefined reference to `Rf_error' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2816): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x285f): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2872): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2896): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2905): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2914): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x295d): more undefined references to `log' follow /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x29dd): undefined reference to `ddot_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2a15): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2a49): undefined reference to `log' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2bdd): undefined reference to `Rprintf' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2ca5): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2e9c): undefined reference to `Rf_warning' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2edf): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x30f9): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x314d): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x31e2): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3237): undefined reference to `daxpy_' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x337e): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3389): undefined reference to `malloc' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3566): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x36ba): undefined reference to `exp' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x36e9): undefined reference to `exp' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x375f): undefined reference to `Rprintf' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3933): undefined reference to `sqrt' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3d9): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x13e9): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x14aa): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2ed5): undefined reference to `free' /usr/bin/ld: vbsr.o:vbsr.c:(.text+0x35d5): undefined reference to `free' collect2: error: ld returned 1 exit status make: *** [/home/biocbuild/bbs-3.16-bioc/R/share/make/shlib.mk:10: TraRe.so] Error 1 ERROR: compilation failed for package ‘TraRe’ * removing ‘/home/biocbuild/bbs-3.16-bioc/R/library/TraRe’