Multiple platform build/check report for BioC 3.16 - BUILD results for MDTS on kjohnson

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This page was generated on 2022-07-07 11:11:27 -0400 (Thu, 07 Jul 2022).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics"	4343
palomino4	Windows Server 2022 Datacenter	x64	4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics"	4148
lconway	macOS 12.2.1 Monterey	x86_64	4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics"	4160
kjohnson	macOS 12.4 Monterey	arm64	4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics"	3115
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MDTS on kjohnson

To the developers/maintainers of the MDTS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MDTS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

MDTS 1.17.0 (landing page)
Jack M.. Fu

Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)

git_url: https://git.bioconductor.org/packages/MDTS

git_branch: master

git_last_commit: e0c9fb3

git_last_commit_date: 2022-04-26 11:47:47 -0400 (Tue, 26 Apr 2022)

nebbiolo2

Linux (Ubuntu 20.04.4 LTS) / x86_64

palomino4

Windows Server 2022 Datacenter / x64

lconway

macOS 12.2.1 Monterey / x86_64

kjohnson

macOS 12.4 Monterey / arm64

ERROR

skipped

Summary

Package: MDTS

Version: 1.17.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MDTS

StartedAt: 2022-07-06 23:49:23 -0400 (Wed, 06 Jul 2022)

EndedAt: 2022-07-06 23:49:56 -0400 (Wed, 06 Jul 2022)

EllapsedTime: 33.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MDTS
###
##############################################################################
##############################################################################


* checking for file ‘MDTS/DESCRIPTION’ ... OK
* preparing ‘MDTS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘mdts.Rmd’ using knitr
Quitting from lines 42-46 (mdts.Rmd) 
Error: processing vignette 'mdts.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
--- failed re-building ‘mdts.Rmd’

SUMMARY: processing the following file failed:
  ‘mdts.Rmd’

Error: Vignette re-building failed.
Execution halted