Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:10 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HIPPO package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HIPPO.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 916/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HIPPO 1.10.0 (landing page) Tae Kim
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: HIPPO |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HIPPO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HIPPO_1.10.0.tar.gz |
StartedAt: 2023-04-10 20:40:09 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 20:42:43 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 153.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HIPPO.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HIPPO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HIPPO_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/HIPPO.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HIPPO/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HIPPO’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HIPPO’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ensg_to_hgnc: no visible global function definition for ‘data’ ensg_to_hgnc: no visible binding for global variable ‘ensg_hgnc’ hippo: no visible global function definition for ‘is’ hippo_feature_heatmap: no visible binding for global variable ‘zvalue’ hippo_tsne_plot: no visible binding for global variable ‘K’ hippo_umap_plot: no visible binding for global variable ‘K’ preprocess_homogeneous: no visible global function definition for ‘is’ zero_proportion_plot: no visible binding for global variable ‘K’ zero_proportion_plot: no visible binding for global variable ‘zvalue’ zero_proportion_plot: no visible binding for global variable ‘featurecount’ Undefined global functions or variables: K data ensg_hgnc featurecount is zvalue Consider adding importFrom("methods", "is") importFrom("utils", "data") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/HIPPO.Rcheck/00check.log’ for details.
HIPPO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HIPPO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘HIPPO’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HIPPO)
HIPPO.Rcheck/HIPPO-Ex.timings
name | user | system | elapsed | |
get_data_from_sce | 0.524 | 0.012 | 0.539 | |
get_hippo | 0.180 | 0.018 | 0.199 | |
get_hippo_diffexp | 0.626 | 0.034 | 0.664 | |
hippo | 0.645 | 0.017 | 0.664 | |
hippo_diagnostic_plot | 0.254 | 0.016 | 0.272 | |
hippo_diffexp | 0.513 | 0.023 | 0.535 | |
hippo_dimension_reduction | 0.558 | 0.041 | 0.602 | |
hippo_feature_heatmap | 0.817 | 0.024 | 0.842 | |
hippo_pca_plot | 0.370 | 0.017 | 0.389 | |
hippo_tsne_plot | 0.543 | 0.029 | 0.574 | |
hippo_umap_plot | 0.849 | 0.058 | 0.909 | |
nb_prob_zero | 0 | 0 | 0 | |
pois_prob_zero | 0 | 0 | 0 | |
preprocess_heterogeneous | 0.089 | 0.012 | 0.101 | |
preprocess_homogeneous | 0.085 | 0.007 | 0.092 | |
zero_proportion_plot | 0.650 | 0.047 | 0.699 | |
zinb_prob_zero | 0 | 0 | 0 | |