Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-07-07 11:11:12 -0400 (Thu, 07 Jul 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GenomicDataCommons package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicDataCommons.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 762/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GenomicDataCommons 1.21.1 (landing page) Sean Davis
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
Package: GenomicDataCommons |
Version: 1.21.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons |
StartedAt: 2022-07-06 21:40:54 -0400 (Wed, 06 Jul 2022) |
EndedAt: 2022-07-06 21:41:46 -0400 (Wed, 06 Jul 2022) |
EllapsedTime: 52.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons ### ############################################################################## ############################################################################## * checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK * preparing ‘GenomicDataCommons’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘overview.Rmd’ using rmarkdown Loading required package: magrittr Attaching package: 'GenomicDataCommons' The following object is masked from 'package:stats': filter --- finished re-building ‘overview.Rmd’ --- re-building ‘questions-and-answers.Rmd’ using rmarkdown --- finished re-building ‘questions-and-answers.Rmd’ --- re-building ‘somatic_mutations.Rmd’ using rmarkdown Quitting from lines 69-75 (somatic_mutations.Rmd) Error: processing vignette 'somatic_mutations.Rmd' failed with diagnostics: there is no package called 'VariantAnnotation' --- failed re-building ‘somatic_mutations.Rmd’ SUMMARY: processing the following file failed: ‘somatic_mutations.Rmd’ Error: Vignette re-building failed. Execution halted