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This page was generated on 2022-07-07 11:11:11 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for GenomeInfoDb on kjohnson


To the developers/maintainers of the GenomeInfoDb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomeInfoDb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 758/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomeInfoDb 1.33.3  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/GenomeInfoDb
git_branch: master
git_last_commit: d74071c
git_last_commit_date: 2022-05-09 14:05:50 -0400 (Mon, 09 May 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    ERROR  
palomino4Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: GenomeInfoDb
Version: 1.33.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomeInfoDb
StartedAt: 2022-07-06 21:40:23 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 21:40:45 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 22.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomeInfoDb
###
##############################################################################
##############################################################################


* checking for file ‘GenomeInfoDb/DESCRIPTION’ ... OK
* preparing ‘GenomeInfoDb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Accept-organism-for-GenomeInfoDb.Rnw’ using knitr
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which.max,
    which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
--- finished re-building ‘Accept-organism-for-GenomeInfoDb.Rnw’

--- re-building ‘GenomeInfoDb.Rnw’ using knitr
Quitting from lines 23-25 (GenomeInfoDb.Rnw) 
Error: processing vignette 'GenomeInfoDb.Rnw' failed with diagnostics:
there is no package called 'TxDb.Dmelanogaster.UCSC.dm3.ensGene'
--- failed re-building ‘GenomeInfoDb.Rnw’

SUMMARY: processing the following file failed:
  ‘GenomeInfoDb.Rnw’

Error: Vignette re-building failed.
Execution halted