This page was generated on 2022-07-07 11:11:11 -0400 (Thu, 07 Jul 2022).
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomeInfoDb
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* checking for file ‘GenomeInfoDb/DESCRIPTION’ ... OK
* preparing ‘GenomeInfoDb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Accept-organism-for-GenomeInfoDb.Rnw’ using knitr
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which.max,
which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
--- finished re-building ‘Accept-organism-for-GenomeInfoDb.Rnw’
--- re-building ‘GenomeInfoDb.Rnw’ using knitr
Quitting from lines 23-25 (GenomeInfoDb.Rnw)
Error: processing vignette 'GenomeInfoDb.Rnw' failed with diagnostics:
there is no package called 'TxDb.Dmelanogaster.UCSC.dm3.ensGene'
--- failed re-building ‘GenomeInfoDb.Rnw’
SUMMARY: processing the following file failed:
‘GenomeInfoDb.Rnw’
Error: Vignette re-building failed.
Execution halted