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This page was generated on 2022-07-11 11:06:42 -0400 (Mon, 11 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4168
kjohnsonmacOS 12.4 Montereyarm644.2.1 (2022-06-23) -- "Funny-Looking Kid" 3545
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BUILD results for Cardinal on kjohnson


To the developers/maintainers of the Cardinal package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Cardinal.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 250/2130HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Cardinal 2.15.0  (landing page)
Kylie A. Bemis
Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)
git_url: https://git.bioconductor.org/packages/Cardinal
git_branch: master
git_last_commit: baf36c4
git_last_commit_date: 2022-04-26 11:23:41 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: Cardinal
Version: 2.15.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cardinal
StartedAt: 2022-07-11 08:15:04 -0400 (Mon, 11 Jul 2022)
EndedAt: 2022-07-11 08:15:37 -0400 (Mon, 11 Jul 2022)
EllapsedTime: 33.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cardinal
###
##############################################################################
##############################################################################


* checking for file ‘Cardinal/DESCRIPTION’ ... OK
* preparing ‘Cardinal’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘Cardinal’ ...
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c DIP.cpp -o DIP.o
In file included from DIP.cpp:2:
In file included from ./Cardinal.h:9:
In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:36:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:56:1: error: templates must have C++ linkage
template <class _Tp> struct __libcpp_is_integral                     { enum { value = 0 }; };
^~~~~~~~~~~~~~~~~~~~
./Cardinal.h:7:1: note: extern "C" language linkage specification begins here
extern "C"
^
In file included from DIP.cpp:2:
In file included from ./Cardinal.h:9:
In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:36:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: error: explicit specialization of undeclared template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^                   ~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:58:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<char>               { enum { value = 1 }; };
                            ^                   ~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:58:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:59:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<signed char>        { enum { value = 1 }; };
                            ^                   ~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:59:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:60:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<unsigned char>      { enum { value = 1 }; };
                            ^                   ~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:60:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:62:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<wchar_t>            { enum { value = 1 }; };
                            ^                   ~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:62:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:68:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<char16_t>           { enum { value = 1 }; };
                            ^                   ~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:68:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:69:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<char32_t>           { enum { value = 1 }; };
                            ^                   ~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:69:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:71:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<short>              { enum { value = 1 }; };
                            ^                   ~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:71:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:72:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<unsigned short>     { enum { value = 1 }; };
                            ^                   ~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:72:29: error: redefinition of '__libcpp_is_integral'
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:57:29: note: previous definition is here
template <>          struct __libcpp_is_integral<bool>               { enum { value = 1 }; };
                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cstddef:73:29: error: explicit specialization of non-template struct '__libcpp_is_integral'
template <>          struct __libcpp_is_integral<int>                { enum { value = 1 }; };
                            ^                   ~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [DIP.o] Error 1
ERROR: compilation failed for package ‘Cardinal’
* removing ‘/private/tmp/RtmpaoclGw/Rinst1258e407db98e/Cardinal’
      -----------------------------------
ERROR: package installation failed