Multiple platform build/check report for BioC 3.16 - BUILD results for BSgenome on kjohnson

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This page was generated on 2022-07-11 11:06:41 -0400 (Mon, 11 Jul 2022).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	4148
lconway	macOS 12.2.1 Monterey	x86_64	4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics"	4168
kjohnson	macOS 12.4 Monterey	arm64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	3545
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BSgenome on kjohnson

To the developers/maintainers of the BSgenome package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

BSgenome 1.65.1 (landing page)
H. Pagès

Snapshot Date: 2022-07-10 14:00:02 -0400 (Sun, 10 Jul 2022)

git_url: https://git.bioconductor.org/packages/BSgenome

git_branch: master

git_last_commit: 3e6a7aa

git_last_commit_date: 2022-05-07 12:57:54 -0400 (Sat, 07 May 2022)

nebbiolo2

Linux (Ubuntu 20.04.4 LTS) / x86_64

WARNINGS

lconway

macOS 12.2.1 Monterey / x86_64

WARNINGS

kjohnson

macOS 12.4 Monterey / arm64

ERROR

skipped

Summary

Package: BSgenome

Version: 1.65.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome

StartedAt: 2022-07-11 04:20:52 -0400 (Mon, 11 Jul 2022)

EndedAt: 2022-07-11 04:21:04 -0400 (Mon, 11 Jul 2022)

EllapsedTime: 11.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
ERROR: dependency ‘rtracklayer’ is not available for package ‘BSgenome’
* removing ‘/private/tmp/RtmpW7W3hJ/Rinst10e2c420a63f2/BSgenome’
      -----------------------------------
ERROR: package installation failed