Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-10-18 14:50:13 -0400 (Tue, 18 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the pcxnData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 272/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
pcxnData 2.18.0 (landing page) Sokratis Kariotis
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: pcxnData |
Version: 2.18.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:pcxnData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings pcxnData_2.18.0.tar.gz |
StartedAt: 2022-10-18 11:35:53 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 11:36:14 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 21.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: pcxnData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:pcxnData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings pcxnData_2.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/pcxnData.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘pcxnData/DESCRIPTION’ ... OK * this is package ‘pcxnData’ version ‘2.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘pcxnData’ can be installed ... OK * checking installed package size ... NOTE installed size is 39.4Mb sub-directories of 1Mb or more: data 39.3Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... WARNING File ‘data/datalist’ contains malformed line(s): ‘cp_gs_v5.1:cp_gs_v5.1’ ‘gobp_gs_v5.1:gobp_gs_v5.1’ ‘h_gs_v5.1:h_gs_v5.1’ ‘pathprint.Hs.gs:pathprint.Hs.gs’ ‘pathCor_CPv5.1_dframe:pathCor_CPv5.1_dframe’ ‘pathCor_GOBPv5.1_dframe:pathCor_GOBPv5.1_dframe’ ‘pathCor_Hv5.1_dframe:pathCor_Hv5.1_dframe’ ‘pathCor_pathprint_v1.2.3_dframe:pathCor_pathprint_v1.2.3_dframe’ ‘pathCor_CPv5.1_unadjusted_dframe:pathCor_CPv5.1_unadjusted_dframe’ ‘pathCor_GOBPv5.1_unadjusted_dframe:pathCor_GOBPv5.1_unadjusted_dframe’ ‘pathCor_Hv5.1_unadjusted_dframe:pathCor_Hv5.1_unadjusted_dframe’ ‘pathCor_pathprint_v1.2.3_unadjusted_dframe:pathCor_pathprint_v1.2.3_unadjusted_dframe’ * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/pcxnData.Rcheck/00check.log’ for details.
pcxnData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL pcxnData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘pcxnData’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcxnData)
pcxnData.Rcheck/pcxnData-Ex.timings
name | user | system | elapsed | |
pcxnData | 2.791 | 0.084 | 2.876 | |