Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the optimalFlowData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 264/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
optimalFlowData 1.7.0 (landing page) Hristo Inouzhe
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: optimalFlowData |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings optimalFlowData_1.7.0.tar.gz |
StartedAt: 2022-02-17 07:44:21 -0500 (Thu, 17 Feb 2022) |
EndedAt: 2022-02-17 07:45:28 -0500 (Thu, 17 Feb 2022) |
EllapsedTime: 67.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: optimalFlowData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings optimalFlowData_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/optimalFlowData.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘optimalFlowData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘optimalFlowData’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘optimalFlowData’ can be installed ... OK * checking installed package size ... NOTE installed size is 101.0Mb sub-directories of 1Mb or more: data 100.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 100.8 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/optimalFlowData.Rcheck/00check.log’ for details.
optimalFlowData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL optimalFlowData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘optimalFlowData’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optimalFlowData)
optimalFlowData.Rcheck/optimalFlowData-Ex.timings
name | user | system | elapsed | |
Cytometry1 | 0.068 | 0.004 | 0.072 | |
Cytometry10 | 0.041 | 0.013 | 0.052 | |
Cytometry11 | 0.046 | 0.011 | 0.058 | |
Cytometry12 | 0.053 | 0.005 | 0.058 | |
Cytometry13 | 0.052 | 0.015 | 0.068 | |
Cytometry14 | 0.06 | 0.02 | 0.08 | |
Cytometry15 | 0.021 | 0.009 | 0.029 | |
Cytometry16 | 0.029 | 0.000 | 0.029 | |
Cytometry17 | 0.103 | 0.035 | 0.139 | |
Cytometry18 | 0.104 | 0.012 | 0.116 | |
Cytometry19 | 0.049 | 0.007 | 0.057 | |
Cytometry2 | 0.110 | 0.005 | 0.114 | |
Cytometry20 | 0.093 | 0.003 | 0.097 | |
Cytometry21 | 0.119 | 0.004 | 0.123 | |
Cytometry22 | 0.052 | 0.004 | 0.056 | |
Cytometry23 | 0.043 | 0.004 | 0.047 | |
Cytometry24 | 0.047 | 0.004 | 0.051 | |
Cytometry25 | 0.048 | 0.001 | 0.048 | |
Cytometry26 | 0.051 | 0.000 | 0.051 | |
Cytometry27 | 0.147 | 0.019 | 0.167 | |
Cytometry28 | 0.135 | 0.032 | 0.167 | |
Cytometry29 | 0.133 | 0.005 | 0.137 | |
Cytometry3 | 0.027 | 0.000 | 0.027 | |
Cytometry30 | 0.111 | 0.000 | 0.111 | |
Cytometry31 | 0.107 | 0.000 | 0.107 | |
Cytometry32 | 0.117 | 0.003 | 0.121 | |
Cytometry33 | 0.063 | 0.004 | 0.067 | |
Cytometry34 | 0.195 | 0.016 | 0.210 | |
Cytometry35 | 0.094 | 0.005 | 0.098 | |
Cytometry36 | 0.018 | 0.003 | 0.022 | |
Cytometry37 | 0.016 | 0.004 | 0.019 | |
Cytometry38 | 0.020 | 0.001 | 0.020 | |
Cytometry39 | 0.016 | 0.003 | 0.020 | |
Cytometry4 | 0.023 | 0.000 | 0.023 | |
Cytometry40 | 0.048 | 0.000 | 0.048 | |
Cytometry5 | 0.021 | 0.000 | 0.021 | |
Cytometry6 | 0.018 | 0.000 | 0.018 | |
Cytometry7 | 0.019 | 0.000 | 0.019 | |
Cytometry8 | 0.023 | 0.000 | 0.023 | |
Cytometry9 | 0.034 | 0.000 | 0.034 | |
buildDatabase | 0.660 | 0.047 | 0.708 | |
cytometry.diagnosis | 0.002 | 0.001 | 0.002 | |
noise.types | 0.000 | 0.001 | 0.001 | |