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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for optimalFlowData on nebbiolo2


To the developers/maintainers of the optimalFlowData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 264/406HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.7.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: master
git_last_commit: f3b88f4
git_last_commit_date: 2021-10-26 12:38:25 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: optimalFlowData
Version: 1.7.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings optimalFlowData_1.7.0.tar.gz
StartedAt: 2022-02-17 07:44:21 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 07:45:28 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 67.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings optimalFlowData_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/optimalFlowData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 100.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0680.0040.072
Cytometry100.0410.0130.052
Cytometry110.0460.0110.058
Cytometry120.0530.0050.058
Cytometry130.0520.0150.068
Cytometry140.060.020.08
Cytometry150.0210.0090.029
Cytometry160.0290.0000.029
Cytometry170.1030.0350.139
Cytometry180.1040.0120.116
Cytometry190.0490.0070.057
Cytometry20.1100.0050.114
Cytometry200.0930.0030.097
Cytometry210.1190.0040.123
Cytometry220.0520.0040.056
Cytometry230.0430.0040.047
Cytometry240.0470.0040.051
Cytometry250.0480.0010.048
Cytometry260.0510.0000.051
Cytometry270.1470.0190.167
Cytometry280.1350.0320.167
Cytometry290.1330.0050.137
Cytometry30.0270.0000.027
Cytometry300.1110.0000.111
Cytometry310.1070.0000.107
Cytometry320.1170.0030.121
Cytometry330.0630.0040.067
Cytometry340.1950.0160.210
Cytometry350.0940.0050.098
Cytometry360.0180.0030.022
Cytometry370.0160.0040.019
Cytometry380.0200.0010.020
Cytometry390.0160.0030.020
Cytometry40.0230.0000.023
Cytometry400.0480.0000.048
Cytometry50.0210.0000.021
Cytometry60.0180.0000.018
Cytometry70.0190.0000.019
Cytometry80.0230.0000.023
Cytometry90.0340.0000.034
buildDatabase0.6600.0470.708
cytometry.diagnosis0.0020.0010.002
noise.types0.0000.0010.001