Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the methylclockData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 224/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
methylclockData 1.3.0 (landing page) Dolors Pelegri-Siso
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: methylclockData |
Version: 1.3.0 |
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings methylclockData_1.3.0.tar.gz |
StartedAt: 2022-02-17 07:35:28 -0500 (Thu, 17 Feb 2022) |
EndedAt: 2022-02-17 07:41:04 -0500 (Thu, 17 Feb 2022) |
EllapsedTime: 336.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: methylclockData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings methylclockData_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/methylclockData.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘methylclockData/DESCRIPTION’ ... OK * this is package ‘methylclockData’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘methylclockData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: references.Rd:40-42: Dropping empty section \details prepare_Rd: references.Rd:43-45: Dropping empty section \source prepare_Rd: references.Rd:46-48: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data with usage in documentation object 'references.rda' but not in code: ‘references’ * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/methylclockData.Rcheck/00check.log’ for details.
methylclockData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL methylclockData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘methylclockData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (methylclockData)
methylclockData.Rcheck/methylclockData-Ex.timings
name | user | system | elapsed | |
get_MethylationDataExample | 3.057 | 0.252 | 3.780 | |
get_TestDataset | 2.082 | 0.184 | 2.634 | |
get_coefBohlin | 3.332 | 0.424 | 4.120 | |
get_coefHannum | 2.370 | 0.160 | 2.892 | |
get_coefHorvath | 2.038 | 0.152 | 2.553 | |
get_coefKnightGA | 1.904 | 0.108 | 2.386 | |
get_coefLeeGA | 1.360 | 0.080 | 1.803 | |
get_coefLevine | 1.924 | 0.156 | 2.438 | |
get_coefMayneGA | 1.929 | 0.103 | 2.390 | |
get_coefPedBE | 2.628 | 0.109 | 3.098 | |
get_coefSkin | 1.789 | 0.076 | 2.224 | |
get_coefTL | 1.865 | 0.080 | 2.310 | |
get_coefWu | 1.590 | 0.100 | 2.047 | |
get_cpgs_bn | 2.649 | 0.152 | 3.178 | |
get_probeAnnotation21kdatMethUsed | 1.612 | 0.104 | 2.076 | |
get_references | 1.628 | 0.056 | 2.042 | |
references | 0.002 | 0.000 | 0.002 | |