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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for methylclockData on nebbiolo2


To the developers/maintainers of the methylclockData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 224/406HostnameOS / ArchINSTALLBUILDCHECK
methylclockData 1.3.0  (landing page)
Dolors Pelegri-Siso
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/methylclockData
git_branch: master
git_last_commit: 516d469
git_last_commit_date: 2021-10-26 12:40:01 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: methylclockData
Version: 1.3.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings methylclockData_1.3.0.tar.gz
StartedAt: 2022-02-17 07:35:28 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 07:41:04 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 336.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: methylclockData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings methylclockData_1.3.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/methylclockData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘methylclockData/DESCRIPTION’ ... OK
* this is package ‘methylclockData’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘methylclockData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: references.Rd:40-42: Dropping empty section \details
prepare_Rd: references.Rd:43-45: Dropping empty section \source
prepare_Rd: references.Rd:46-48: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data with usage in documentation object 'references.rda' but not in code:
  ‘references’

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/methylclockData.Rcheck/00check.log’
for details.



Installation output

methylclockData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL methylclockData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘methylclockData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (methylclockData)

Tests output


Example timings

methylclockData.Rcheck/methylclockData-Ex.timings

nameusersystemelapsed
get_MethylationDataExample3.0570.2523.780
get_TestDataset2.0820.1842.634
get_coefBohlin3.3320.4244.120
get_coefHannum2.3700.1602.892
get_coefHorvath2.0380.1522.553
get_coefKnightGA1.9040.1082.386
get_coefLeeGA1.3600.0801.803
get_coefLevine1.9240.1562.438
get_coefMayneGA1.9290.1032.390
get_coefPedBE2.6280.1093.098
get_coefSkin1.7890.0762.224
get_coefTL1.8650.0802.310
get_coefWu1.5900.1002.047
get_cpgs_bn2.6490.1523.178
get_probeAnnotation21kdatMethUsed1.6120.1042.076
get_references1.6280.0562.042
references0.0020.0000.002