Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-10-18 14:50:11 -0400 (Tue, 18 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the depmap package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 88/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
depmap 1.10.0 (landing page) Laurent Gatto
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: depmap |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:depmap.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings depmap_1.10.0.tar.gz |
StartedAt: 2022-10-18 11:17:46 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 11:19:24 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 98.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: depmap.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:depmap.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings depmap_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/depmap.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘depmap/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘depmap’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘depmap’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
depmap.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL depmap ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘depmap’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-04-26 ** testing if installed package can be loaded from final location snapshotDate(): 2022-04-26 ** testing if installed package keeps a record of temporary installation path * DONE (depmap)
depmap.Rcheck/depmap-Ex.timings
name | user | system | elapsed | |
RPPA | 0 | 0 | 0 | |
TPM | 0.001 | 0.000 | 0.000 | |
achilles | 0.001 | 0.000 | 0.000 | |
copyNumber | 0 | 0 | 0 | |
crispr | 0.000 | 0.000 | 0.001 | |
gene_summary | 0 | 0 | 0 | |
metadata | 0 | 0 | 0 | |
mutationCalls | 0 | 0 | 0 | |
proteomic | 0 | 0 | 0 | |
rnai | 0.001 | 0.000 | 0.000 | |