Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-10-18 14:50:12 -0400 (Tue, 18 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GenomicDistributionsData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 142/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
GenomicDistributionsData 1.4.0 (landing page) Kristyna Kupkova
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: GenomicDistributionsData |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.4.0.tar.gz |
StartedAt: 2022-10-18 11:23:33 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 11:27:16 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 223.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: GenomicDistributionsData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/GenomicDistributionsData.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GenomicDistributionsData/DESCRIPTION’ ... OK * this is package ‘GenomicDistributionsData’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GenomicDistributionsData’ can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'GenomicDistributionsData' See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/GenomicDistributionsData.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/GenomicDistributionsData.Rcheck/00check.log’ for details.
GenomicDistributionsData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL GenomicDistributionsData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘GenomicDistributionsData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'GenomicDistributionsData' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'GenomicDistributionsData' snapshotDate(): 2022-04-26 ** testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'GenomicDistributionsData' snapshotDate(): 2022-04-26 ** testing if installed package keeps a record of temporary installation path * DONE (GenomicDistributionsData)
GenomicDistributionsData.Rcheck/GenomicDistributionsData-Ex.timings
name | user | system | elapsed | |
GenomicDistributionsData | 0.000 | 0.000 | 0.001 | |
TSS_hg19 | 1.733 | 0.286 | 2.176 | |
TSS_hg38 | 0.823 | 0.048 | 0.961 | |
TSS_mm10 | 0.916 | 0.051 | 1.088 | |
TSS_mm9 | 0.813 | 0.086 | 0.996 | |
buildChromSizes | 0.000 | 0.000 | 0.001 | |
buildGeneModels | 0 | 0 | 0 | |
buildOpenSignalMatrix | 0 | 0 | 0 | |
buildTSS | 0.000 | 0.001 | 0.000 | |
chromSizes_hg19 | 0.682 | 0.063 | 0.861 | |
chromSizes_hg38 | 0.660 | 0.048 | 0.797 | |
chromSizes_mm10 | 0.651 | 0.064 | 0.821 | |
chromSizes_mm9 | 0.654 | 0.064 | 0.806 | |
geneModels_hg19 | 0.834 | 0.100 | 1.022 | |
geneModels_hg38 | 0.892 | 0.092 | 1.110 | |
geneModels_mm10 | 0.815 | 0.060 | 0.972 | |
geneModels_mm9 | 1.714 | 0.223 | 2.037 | |
loadBSgenome | 0 | 0 | 0 | |
loadEnsDb | 0.000 | 0.000 | 0.001 | |
loadTxDb | 0 | 0 | 0 | |
openSignalMatrix_hg19 | 0 | 0 | 0 | |
openSignalMatrix_hg38 | 0 | 0 | 0 | |
openSignalMatrix_mm10 | 0 | 0 | 0 | |