Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:51 -0500 (Thu, 17 Feb 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ChAMPdata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 52/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
ChAMPdata 2.27.1 (landing page) Yuan Tian
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: ChAMPdata |
Version: 2.27.1 |
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings ChAMPdata_2.27.1.tar.gz |
StartedAt: 2022-02-17 07:09:20 -0500 (Thu, 17 Feb 2022) |
EndedAt: 2022-02-17 07:15:48 -0500 (Thu, 17 Feb 2022) |
EllapsedTime: 387.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ChAMPdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings ChAMPdata_2.27.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/ChAMPdata.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ChAMPdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ChAMPdata’ version ‘2.27.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ChAMPdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 730.0Mb sub-directories of 1Mb or more: data 606.3Mb extdata 123.6Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Error loading dataset 'bloodCtl': Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'nrow': no slot of name "elementMetadata" for this object of class "RGChannelSetExtended" Error loading dataset 'myLoad': Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'nrow': no slot of name "elementMetadata" for this object of class "MethylSet" * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ChAMPdata-package 47.257 1.355 48.615 testDataSet 10.699 0.147 10.847 AnnoEPIC 7.192 0.323 7.516 EPIC.manifest.hg19 5.540 0.200 5.740 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/ChAMPdata.Rcheck/00check.log’ for details.
ChAMPdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL ChAMPdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘ChAMPdata’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChAMPdata)
ChAMPdata.Rcheck/ChAMPdata-Ex.timings
name | user | system | elapsed | |
Anno450K | 4.283 | 0.099 | 4.383 | |
AnnoEPIC | 7.192 | 0.323 | 7.516 | |
CellTypeMeans27K | 0.003 | 0.000 | 0.004 | |
CellTypeMeans450K | 0.003 | 0.000 | 0.003 | |
ChAMPdata-package | 47.257 | 1.355 | 48.615 | |
ControlProbes450K | 0.001 | 0.000 | 0.001 | |
ControlProbesEPIC | 0.001 | 0.001 | 0.001 | |
EPIC.manifest.hg19 | 5.54 | 0.20 | 5.74 | |
EPIC.manifest.pop.hg19 | 3.479 | 0.015 | 3.494 | |
EPICSimData | 2.750 | 0.128 | 2.877 | |
MatchGeneName | 0.02 | 0.00 | 0.02 | |
PathwayList | 0.434 | 0.000 | 0.434 | |
bloodCtl | 0.001 | 0.000 | 0.002 | |
hm450.manifest.hg19 | 1.895 | 0.000 | 1.895 | |
hm450.manifest.pop.hg19 | 2.325 | 0.060 | 2.384 | |
hprdAsigH | 2.193 | 0.209 | 2.400 | |
illumina450Gr | 3.525 | 0.007 | 3.532 | |
illuminaEPICGr | 4.235 | 0.008 | 4.242 | |
multi.hit | 1.364 | 0.056 | 1.420 | |
probe.features | 0.687 | 0.004 | 0.690 | |
probe.features.epic | 1.778 | 0.004 | 1.783 | |
probeInfoALL.epic.lv | 0.738 | 0.000 | 0.739 | |
probeInfoALL.lv | 0.512 | 0.000 | 0.512 | |
snp.hit | 0.868 | 0.009 | 0.875 | |
testDataSet | 10.699 | 0.147 | 10.847 | |