Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-10-18 14:50:11 -0400 (Tue, 18 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CardinalWorkflows package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 45/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
CardinalWorkflows 1.28.0 (landing page) Kylie A. Bemis
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: CardinalWorkflows |
Version: 1.28.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:CardinalWorkflows.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings CardinalWorkflows_1.28.0.tar.gz |
StartedAt: 2022-10-18 11:12:48 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 11:14:22 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 94.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CardinalWorkflows.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:CardinalWorkflows.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings CardinalWorkflows_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/CardinalWorkflows.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CardinalWorkflows/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CardinalWorkflows’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CardinalWorkflows’ can be installed ... OK * checking installed package size ... NOTE installed size is 135.1Mb sub-directories of 1Mb or more: data 135.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed rcc-data 6.757 0.487 7.245 cardinal-data 6.238 0.324 6.564 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log’ for details.
CardinalWorkflows.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL CardinalWorkflows ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘CardinalWorkflows’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CardinalWorkflows)
CardinalWorkflows.Rcheck/CardinalWorkflows-Ex.timings
name | user | system | elapsed | |
cardinal-data | 6.238 | 0.324 | 6.564 | |
pig206-data | 3.336 | 0.245 | 3.584 | |
rcc-data | 6.757 | 0.487 | 7.245 | |