Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:08:51 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for tidybulk on riesling1


To the developers/maintainers of the tidybulk package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidybulk.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1956/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidybulk 1.7.1  (landing page)
Stefano Mangiola
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/tidybulk
git_branch: master
git_last_commit: 54e7c65
git_last_commit_date: 2021-11-21 01:00:34 -0400 (Sun, 21 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: tidybulk
Version: 1.7.1
Command: rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=tidybulk.buildbin-libdir tidybulk_1.7.1.tar.gz
StartedAt: 2022-03-17 21:44:38 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:45:59 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 80.7 seconds
RetCode: 0
Status:   OK  
PackageFile: tidybulk_1.7.1.zip
PackageFileSize: 3.903 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=tidybulk.buildbin-libdir tidybulk_1.7.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'tidybulk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'floor' 
Note: wrong number of arguments to 'floor' 
** help
*** installing help indices
  converting help for package 'tidybulk'
    finding HTML links ... done
    X_cibersort                             html  
    adjust_abundance-methods                html  
    aggregate_duplicates-methods            html  
    arrange-methods                         html  
    as_SummarizedExperiment-methods         html  
    as_matrix                               html  
    bind-methods                            html  
    breast_tcga_mini_SE                     html  
    check_if_counts_is_na                   html  
    check_if_duplicated_genes               html  
    check_if_wrong_input                    html  
    cluster_elements-methods                html  
    counts_SE                               html  
    counts_ensembl                          html  
    deconvolve_cellularity-methods          html  
    describe_transcript-methods             html  
    distinct-methods                        html  
    dplyr-methods                           html  
    ensembl_symbol_mapping                  html  
    ensembl_to_symbol-methods               html  
    fill_missing_abundance-methods          html  
    filter-methods                          html  
    flybaseIDs                              html  
    get_bibliography-methods                html  
    get_reduced_dimensions_UMAP_bulk        html  
    get_reduced_dimensions_UMAP_bulk_SE     html  
    group_by-methods                        html  
    identify_abundant-methods               html  
    impute_missing_abundance-methods        html  
    join-methods                            html  
    keep_abundant-methods                   html  
    keep_variable-methods                   html  
    log10_reverse_trans                     html  
    logit_trans                             html  
    mutate-methods                          html  
    nest-methods                            html  
    pipe                                    html  
    pivot_sample-methods                    html  
    pivot_transcript-methods                html  
    reduce_dimensions-methods               html  
    reexports                               html  
    remove_redundancy-methods               html  
    rename-methods                          html  
    rotate_dimensions-methods               html  
    rowwise-methods                         html  
    scale_abundance-methods                 html  
    se                                      html  
    se_mini                                 html  
    summarise-methods                       html  
    symbol_to_entrez                        html  
    test_deseq2_df                          html  
    test_differential_abundance-methods     html  
    test_differential_cellularity-methods   html  
    test_gene_enrichment-methods            html  
    test_gene_overrepresentation-methods    html  
    test_gene_rank-methods                  html  
    test_stratification_cellularity-methods
                                            html  
    tidybulk-methods                        html  
    tidybulk_SAM_BAM-methods                html  
    vignette_manuscript_signature_boxplot   html  
    vignette_manuscript_signature_tsne      html  
    vignette_manuscript_signature_tsne2     html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'tidybulk' as tidybulk_1.7.1.zip
* DONE (tidybulk)