Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:08:46 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for spiky on riesling1


To the developers/maintainers of the spiky package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spiky.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1866/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spiky 1.1.0  (landing page)
Tim Triche
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/spiky
git_branch: master
git_last_commit: 6099339
git_last_commit_date: 2021-10-26 13:10:41 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: spiky
Version: 1.1.0
Command: rm -rf spiky.buildbin-libdir && mkdir spiky.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=spiky.buildbin-libdir spiky_1.1.0.tar.gz
StartedAt: 2022-03-17 21:42:09 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:43:28 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 79.4 seconds
RetCode: 0
Status:   OK  
PackageFile: spiky_1.1.0.zip
PackageFileSize: 4.712 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf spiky.buildbin-libdir && mkdir spiky.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=spiky.buildbin-libdir spiky_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'spiky' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spiky'
    finding HTML links ... done
    add_frag_info                           html  
    bam_to_bins                             html  
    bin_pmol                                html  
    covg_to_df                              html  
    dedup                                   html  
    find_spike_contigs                      html  
    genbank_mito                            html  
    generate_spike_fasta                    html  
    get_base_name                           html  
    get_binned_coverage                     html  
    get_merged_gr                           html  
    get_spike_depth                         html  
    get_spiked_coverage                     html  
    kmax                                    html  
    kmers                                   html  
    methylation_specificity                 html  
    model_bam_standards                     html  
    model_glm_pmol                          html  
    parse_spike_UMI                         html  
    phage                                   html  
    predict_pmol                            html  
    process_spikes                          html  
    rename_spike_seqlevels                  html  
    rename_spikes                           html  
    scan_genomic_contigs                    html  
    scan_methylation_specificity            html  
    scan_spike_contigs                      html  
    scan_spike_counts                       html  
    scan_spiked_bam                         html  
    seqinfo_from_header                     html  
    spike                                   html  
    spike_bland_altman_plot                 html  
    spike_counts                            html  
    spike_cram_counts                       html  
    spike_read_counts                       html  
    spiky-methods                           html  
    ssb_res                                 html  
    testGR                                  html  
    tile_bins                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'spiky' as spiky_1.1.0.zip
* DONE (spiky)