Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:08:32 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for ropls on riesling1


To the developers/maintainers of the ropls package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ropls.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1653/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ropls 1.27.6  (landing page)
Etienne A. Thevenot
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/ropls
git_branch: master
git_last_commit: f23264c
git_last_commit_date: 2022-03-16 06:17:26 -0400 (Wed, 16 Mar 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ropls
Version: 1.27.6
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ropls.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ropls_1.27.6.tar.gz
StartedAt: 2022-03-17 20:06:58 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 20:08:00 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 61.9 seconds
RetCode: 0
Status:   OK  
CheckDir: ropls.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ropls.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ropls_1.27.6.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/ropls.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ropls/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ropls' version '1.27.6'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ropls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'MultiDataSet'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/ropls.Rcheck/00check.log'
for details.



Installation output

ropls.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ropls
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ropls' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'opls' with signature 'x="MultiDataSet"': no definition for class "MultiDataSet"
** help
*** installing help indices
  converting help for package 'ropls'
    finding HTML links ... done
    aminoacids                              html  
    cellulose                               html  
    checkW4M                                html  
    coef                                    html  
    cornell                                 html  
    fitted                                  html  
    foods                                   html  
    fromW4M                                 html  
    getEset                                 html  
    getLoadingMN                            html  
    getMset                                 html  
    getPcaVarVn                             html  
    getScoreMN                              html  
    getSubsetVi                             html  
    getSummaryDF                            html  
    getVipVn                                html  
    getWeightMN                             html  
    linnerud                                html  
    lowarp                                  html  
    mark                                    html  
    opls-class                              html  
    opls                                    html  
    oplsMultiDataSet-class                  html  
    plot                                    html  
    predict                                 html  
    print                                   html  
    residuals                               html  
    ropls-package                           html  
    sacurine                                html  
    show                                    html  
    tested                                  html  
    toW4M                                   html  
    view                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ropls)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'BiocIO' is missing or broken
 done

Tests output


Example timings

ropls.Rcheck/ropls-Ex.timings

nameusersystemelapsed
checkW4M0.100.000.11
coef0.610.150.77
fitted1.140.101.24
fromW4M0.140.000.14
getEset0.610.120.74
getLoadingMN0.460.140.61
getMset4.490.284.76
getPcaVarVn0.060.020.08
getScoreMN0.450.000.45
getSubsetVi0.070.000.06
getSummaryDF0.480.000.49
getVipVn0.440.000.44
getWeightMN0.440.000.43
opls-class1.570.061.64
opls2.690.022.72
oplsMultiDataSet-class000
plot2.350.012.36
predict0.040.000.05
print0.440.000.44
residuals0.270.000.26
ropls-package1.730.001.74
show0.440.000.43
tested0.060.000.07
toW4M0.110.000.11
view0.480.030.51