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This page was generated on 2022-03-18 11:08:25 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for rcellminer on riesling1


To the developers/maintainers of the rcellminer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rcellminer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1550/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rcellminer 2.17.0  (landing page)
Augustin Luna , Vinodh Rajapakse
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/rcellminer
git_branch: master
git_last_commit: 319139e
git_last_commit_date: 2021-10-26 12:19:31 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rcellminer
Version: 2.17.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rcellminer
StartedAt: 2022-03-17 15:31:04 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:32:16 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 71.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rcellminer
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'rcellminer' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rcellminer'
    finding HTML links ... done
    DrugData-class                          html  
    DrugData-eSet-eSet-MIAxE-method         html  
    DrugData                                html  
    Drug_MOA_Key                            html  
    MolData-class                           html  
    MolData-list-MIAxE-method               html  
    MolData                                 html  
    cmVersion                               html  
    crossCors                               html  
    crossCorsSpearman                       html  
    dot-onAttach                            html  
    dot-onLoad                              html  
    drugDB                                  html  
    elNetMolDataNCI60                       html  
    fingerprintList                         html  
    getAct-DrugData-method                  html  
    getAct                                  html  
    getActivityRangeStats                   html  
    getAllFeatureData-MolData-method        html  
    getAllFeatureData                       html  
    getBinaryMutationData                   html  
    getColumnQuantiles                      html  
    getDrugActivityData                     html  
    getDrugActivityRange                    html  
    getDrugActivityRepeatData               html  
    getDrugMoaList                          html  
    getDrugName                             html  
    getESetList-MolData-method              html  
    getESetList                             html  
    getFeatureAnnot-DrugData-method         html  
    getFeatureAnnot-MolData-method          html  
    getFeatureAnnot                         html  
    getFeatureDataFromMatList               html  
    getMedSenLineActivity                   html  
    getMinDrugActivityRepeatCor             html  
    getMoaStr                               html  
    getMoaToCompounds                       html  
    getMolDataMatrices                      html  
    getMolDataType                          html  
    getNumDrugActivityRepeats               html  
    getNumMissingLines                      html  
    getRepeatAct-DrugData-method            html  
    getRepeatAct                            html  
    getRsd                                  html  
    getSampleData-DrugData-method           html  
    getSampleData-MolData-method            html  
    getSampleData                           html  
    getSmiles                               html  
    hasMoa                                  html  
    initialize-DrugData-method              html  
    initialize-MolData-method               html  
    isPublic                                html  
    loadCellminerPlotInfo                   html  
    loadNciColorSet                         html  
    parCorPatternComparison                 html  
    patternComparison                       html  
    plotCellMiner                           html  
    plotCellMiner2D                         html  
    plotDrugActivityRepeats                 html  
    plotDrugSets                            html  
    removeMolDataType                       html  
    restrictFeatureMat                      html  
    rowCors                                 html  
    searchForNscs                           html  
    selectCorrelatedRows                    html  
    selectCorrelatedRowsFromMatrices        html  
    sub-sub-MolData-method                  html  
    sub-subset-MolData-method               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rcellminer)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'NanoStringDiff' is missing or broken
 done