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This page was generated on 2022-03-18 11:08:23 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for qrqc on riesling1


To the developers/maintainers of the qrqc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qrqc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1508/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qrqc 1.49.0  (landing page)
Vince Buffalo
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/qrqc
git_branch: master
git_last_commit: 232c528
git_last_commit_date: 2021-10-26 11:58:43 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: qrqc
Version: 1.49.0
Command: rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=qrqc.buildbin-libdir qrqc_1.49.0.tar.gz
StartedAt: 2022-03-17 21:30:42 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:32:00 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 77.7 seconds
RetCode: 0
Status:   OK  
PackageFile: qrqc_1.49.0.zip
PackageFileSize: 894.1 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=qrqc.buildbin-libdir qrqc_1.49.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'qrqc' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c R_init_io.c -o R_init_io.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c io.c -o io.o
In file included from io.c:12:
D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include/htslib/kseq.h:176:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
  SCOPE void kseq_destroy(kseq_t *ks)         \
             ^~~~~~~~~~~~
D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include/htslib/kseq.h:241:2: note: in expansion of macro '__KSEQ_BASIC'
  __KSEQ_BASIC(SCOPE, type_t)     \
  ^~~~~~~~~~~~
D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include/htslib/kseq.h:244:35: note: in expansion of macro 'KSEQ_INIT2'
 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
                                   ^~~~~~~~~~
io.c:29:1: note: in expansion of macro 'KSEQ_INIT'
 KSEQ_INIT(FILE_TYPE*, gzreadclone)
 ^~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/qrqc.buildbin-libdir/00LOCK-qrqc/00new/qrqc/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'qrqc'
    finding HTML links ... done
    FASTASummary-class                      html  
    FASTQSummary-class                      html  
    SequenceSummary-class                   html  
    basePlot-methods                        html  
    calcKL                                  html  
    gcPlot-methods                          html  
    geom_qlinerange                         html  
    getBase-methods                         html  
    getBaseProp-methods                     html  
    getGC-methods                           html  
    getKmer-methods                         html  
    getMCQual-methods                       html  
    getQual-methods                         html  
    getSeqlen-methods                       html  
    kmerEntropyPlot                         html  
    kmerKLPlot                              html  
    list2df                                 html  
    makeReport                              html  
    plotBases                               html  
    plotGC                                  html  
    plotQuals                               html  
    plotSeqLengths                          html  
    qualPlot-methods                        html  
    readSeqFile                             html  
    scale_color_dna                         html  
    scale_color_iupac                       html  
    seqlenPlot-methods                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'qrqc' as qrqc_1.49.0.zip
* DONE (qrqc)