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This page was generated on 2022-03-18 11:07:40 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for gpuMagic on riesling1


To the developers/maintainers of the gpuMagic package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpuMagic.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 817/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpuMagic 1.11.0  (landing page)
Jiefei Wang
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/gpuMagic
git_branch: master
git_last_commit: 8199347
git_last_commit_date: 2022-01-25 22:36:02 -0400 (Tue, 25 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  ERROR    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: gpuMagic
Version: 1.11.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL gpuMagic
StartedAt: 2022-03-17 15:29:43 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:30:36 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 53.4 seconds
RetCode: 1
Status:   ERROR  

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL gpuMagic
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'gpuMagic' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c C_Interface.cpp -o C_Interface.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c R_functionRegistration.cpp -o R_functionRegistration.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c Tools.cpp -o Tools.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c kernelManager.cpp -o kernelManager.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c openArray.cpp -o openArray.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o gpuMagic.dll tmp.def C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o C:/Windows/SysWOW64/OpenCL.dll -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x3ca): undefined reference to `clGetEventInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x1234): undefined reference to `clEnqueueNDRangeKernel'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x139b): undefined reference to `clFlush'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x2015): undefined reference to `clSetKernelArg'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x2599): undefined reference to `clGetKernelWorkGroupInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x2b10): undefined reference to `clSetKernelArg'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x2e): undefined reference to `clGetPlatformIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x106): undefined reference to `clGetPlatformIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x163): undefined reference to `clGetPlatformIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x1c2): undefined reference to `clGetDeviceIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x25c): undefined reference to `clGetDeviceIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x313): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x3c7): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x40a): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x432): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x45c): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x484): more undefined references to `clGetDeviceInfo' follow
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x73e): undefined reference to `clCreateContext'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x79c): undefined reference to `clCreateCommandQueue'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x15cc): undefined reference to `clFlush'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x15d6): undefined reference to `clFinish'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x1615): undefined reference to `clReleaseKernel'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x1645): undefined reference to `clReleaseProgram'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x16ac): undefined reference to `clReleaseCommandQueue'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x16b8): undefined reference to `clReleaseContext'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x2367): undefined reference to `clCreateProgramWithSource'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x239e): undefined reference to `clBuildProgram'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x2866): undefined reference to `clGetProgramBuildInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x289e): undefined reference to `clGetProgramBuildInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x35fd): undefined reference to `clCreateKernel'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0xe7): undefined reference to `clReleaseMemObject'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0x175): undefined reference to `clEnqueueReadBuffer'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0x385): undefined reference to `clCreateBuffer'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0x908): undefined reference to `clEnqueueFillBuffer'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0xa58): undefined reference to `clCreateBuffer'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'gpuMagic'
* removing 'D:/biocbuild/bbs-3.15-bioc/R/library/gpuMagic'