Alice Yue
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/flowGraph |
| git_branch: master |
| git_last_commit: 86a9006 |
| git_last_commit_date: 2021-10-26 13:05:40 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:31 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the flowGraph package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowGraph.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 664/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowGraph 1.3.0 (landing page) Alice Yue
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: flowGraph |
| Version: 1.3.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowGraph.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowGraph_1.3.0.tar.gz |
| StartedAt: 2022-03-17 19:06:41 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:10:16 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 214.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowGraph.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowGraph.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowGraph_1.3.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/flowGraph.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowGraph/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowGraph' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowGraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
get_child: no visible binding for global variable 'no_cores'
get_paren: no visible binding for global variable 'no_cores'
ms_psig: no visible binding for global variable 'meta'
Undefined global functions or variables:
meta no_cores
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fg_save 37.33 0.92 38.28
fg_load 35.28 0.98 36.31
fg_save_plots 34.58 0.72 35.33
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/flowGraph.Rcheck/00check.log'
for details.
flowGraph.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL flowGraph
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'flowGraph' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: flowGraph
*** installing help indices
converting help for package 'flowGraph'
finding HTML links ... done
cell_type_layers html
extract_markers html
fg_add_feature html
fg_add_summary html
fg_clean_phen html
fg_clear_features html
fg_clear_summary html
fg_data_fca html
fg_data_pos2 html
fg_data_pos30 html
fg_extract_phenotypes html
fg_extract_raw html
fg_extract_samples html
fg_feat_cumsum html
fg_feat_edge_specenr html
fg_feat_mean_class html
fg_feat_node_prop html
fg_feat_node_specenr html
fg_feat_prop_edge html
fg_get_feature html
fg_get_feature_desc html
fg_get_feature_means html
fg_get_graph html
fg_get_markers html
fg_get_meta html
fg_get_summary html
fg_get_summary_desc html
fg_get_summary_index html
fg_get_summary_tables html
fg_gsub_ids html
fg_gsub_markers html
fg_load html
fg_merge html
fg_merge_samples html
fg_plot html
fg_plot_box html
fg_plot_pVSdiff html
fg_plot_qq html
fg_replace_meta html
fg_rm_feature html
fg_rm_summary html
fg_save html
fg_save_plots html
fg_set_layout html
fg_summary html
flowGraph-class html
flowGraph html
flowGraphSubset html
flowGraphSubset_summary_adjust html
flowGraphSubset_summary_pars html
fpurrr_map html
get_child html
get_eprop html
get_paren html
get_phen_list html
get_phen_meta html
ggdf html
loop_ind_f html
meandiff html
ms_create html
ms_psig html
plot_gr html
set_layout_graph html
summary_table html
test_c html
time_output html
tstr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowGraph)
Making 'packages.html' ... done
flowGraph.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(flowGraph)
>
> test_check("flowGraph")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
>
> proc.time()
user system elapsed
3.95 0.39 4.31
flowGraph.Rcheck/flowGraph-Ex.timings
| name | user | system | elapsed | |
| cell_type_layers | 0 | 0 | 0 | |
| fg_add_feature | 0.30 | 0.01 | 0.31 | |
| fg_add_summary | 0.67 | 0.02 | 0.69 | |
| fg_clean_phen | 0 | 0 | 0 | |
| fg_clear_features | 0.63 | 0.00 | 0.63 | |
| fg_clear_summary | 0.26 | 0.00 | 0.26 | |
| fg_extract_phenotypes | 0.2 | 0.0 | 0.2 | |
| fg_extract_raw | 0.54 | 0.00 | 0.54 | |
| fg_extract_samples | 0.21 | 0.00 | 0.21 | |
| fg_feat_cumsum | 0.21 | 0.00 | 0.21 | |
| fg_feat_edge_specenr | 0.25 | 0.02 | 0.26 | |
| fg_feat_mean_class | 0.26 | 0.01 | 0.28 | |
| fg_feat_node_prop | 0.22 | 0.00 | 0.22 | |
| fg_feat_node_specenr | 0.25 | 0.00 | 0.25 | |
| fg_feat_prop_edge | 0.21 | 0.00 | 0.21 | |
| fg_get_feature | 0.2 | 0.0 | 0.2 | |
| fg_get_feature_desc | 0.55 | 0.00 | 0.55 | |
| fg_get_feature_means | 0.87 | 0.00 | 0.87 | |
| fg_get_graph | 0.19 | 0.00 | 0.19 | |
| fg_get_markers | 0.17 | 0.00 | 0.17 | |
| fg_get_meta | 0.19 | 0.00 | 0.19 | |
| fg_get_summary | 1.79 | 0.05 | 1.84 | |
| fg_get_summary_desc | 0.54 | 0.01 | 0.55 | |
| fg_get_summary_index | 1.35 | 0.00 | 1.36 | |
| fg_get_summary_tables | 1.30 | 0.00 | 1.29 | |
| fg_gsub_ids | 0.27 | 0.02 | 0.29 | |
| fg_gsub_markers | 0.36 | 0.00 | 0.36 | |
| fg_load | 35.28 | 0.98 | 36.31 | |
| fg_merge | 0.25 | 0.02 | 0.26 | |
| fg_merge_samples | 0.22 | 0.03 | 0.25 | |
| fg_plot | 0.31 | 0.00 | 0.32 | |
| fg_plot_box | 0.56 | 0.00 | 0.56 | |
| fg_plot_pVSdiff | 0.33 | 0.02 | 0.34 | |
| fg_plot_qq | 1.00 | 0.06 | 1.06 | |
| fg_replace_meta | 0.22 | 0.00 | 0.22 | |
| fg_rm_feature | 0.68 | 0.00 | 0.67 | |
| fg_rm_summary | 0.26 | 0.00 | 0.27 | |
| fg_save | 37.33 | 0.92 | 38.28 | |
| fg_save_plots | 34.58 | 0.72 | 35.33 | |
| fg_set_layout | 0.2 | 0.0 | 0.2 | |
| fg_summary | 0.3 | 0.0 | 0.3 | |
| flowGraph-class | 0 | 0 | 0 | |
| flowGraph | 0.73 | 0.00 | 0.73 | |
| flowGraphSubset | 0 | 0 | 0 | |
| flowGraphSubset_summary_adjust | 0 | 0 | 0 | |
| flowGraphSubset_summary_pars | 0 | 0 | 0 | |
| get_phen_list | 0 | 0 | 0 | |
| get_phen_meta | 0 | 0 | 0 | |
| ggdf | 0.17 | 0.02 | 0.19 | |
| loop_ind_f | 0 | 0 | 0 | |
| meandiff | 0 | 0 | 0 | |
| plot_gr | 0.93 | 0.01 | 0.94 | |
| set_layout_graph | 0.21 | 0.03 | 0.25 | |
| summary_table | 0.02 | 0.00 | 0.01 | |
| time_output | 0 | 0 | 0 | |
| tstr | 0 | 0 | 0 | |