Mark Robinson
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/flagme |
| git_branch: master |
| git_last_commit: b4c5a8a |
| git_last_commit_date: 2021-12-02 09:28:32 -0400 (Thu, 02 Dec 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:30 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the flagme package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flagme.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 649/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flagme 1.51.2 (landing page) Mark Robinson
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | ERROR | OK | ERROR | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | ERROR | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | OK | ERROR | OK | |||||||||
| Package: flagme |
| Version: 1.51.2 |
| Command: rm -rf flagme.buildbin-libdir && mkdir flagme.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=flagme.buildbin-libdir flagme_1.51.2.tar.gz |
| StartedAt: 2022-03-17 21:08:17 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:09:16 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 58.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: flagme_1.51.2.zip |
| PackageFileSize: 1.01 MiB |
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### Running command:
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### rm -rf flagme.buildbin-libdir && mkdir flagme.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=flagme.buildbin-libdir flagme_1.51.2.tar.gz
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* installing *source* package 'flagme' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c dp.c -o dp.o
dp.c: In function 'dp':
dp.c:263:26: warning: 'cur_min' may be used uninitialized in this function [-Wmaybe-uninitialized]
D[(i+1)+(j+1)*(nr+1)] = cur_min;
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
dp.c:264:28: warning: 'tb' may be used uninitialized in this function [-Wmaybe-uninitialized]
phi[(i+1)+(j+1)*(nr+1)] = tb;
~~~~~~~~~~~~~~~~~~~~~~~~^~~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c pearson.c -o pearson.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o flagme.dll tmp.def dp.o init.o pearson.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/flagme.buildbin-libdir/00LOCK-flagme/00new/flagme/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flagme'
finding HTML links ... done
addAMDISPeaks html
addChromaTOFPeaks html
addXCMSPeaks html
finding level-2 HTML links ... done
betweenAlignment html
calcTimeDiffs html
clusterAlignment html
compress-peaksAlignment-method html
compress-progressiveAlignment-method html
corPrt html
de_Duper html
decompress-peaksAlignment-method html
decompress-progressiveAlignment-method
html
distToLib html
dp html
dynRT html
eitherMatrix-class html
exportSpectra html
gatherInfo html
headToTailPlot html
importSpec html
imputePeaks html
matchSpec html
multipleAlignment-class html
ndpRT html
normDotProduct html
parseChromaTOF html
parseELU html
peaksAlignment-class html
peaksDataset html
plotAlignedFrags html
plotAlignment-peaksAlignment-method html
plotChrom-peaksDataset-method html
plotClustAlignment-clusterAlignment-method
html
plotFrags html
plotImage html
progressiveAlignment-class html
retFatMatrix html
rmaFitUnit html
show-multipleAlignment-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'flagme' as flagme_1.51.2.zip
* DONE (flagme)