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This page was generated on 2022-03-18 11:07:16 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for cpvSNP on riesling1


To the developers/maintainers of the cpvSNP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cpvSNP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 416/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cpvSNP 1.27.1  (landing page)
Caitlin McHugh
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/cpvSNP
git_branch: master
git_last_commit: 2c30d8e
git_last_commit_date: 2021-11-20 23:29:07 -0400 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cpvSNP
Version: 1.27.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cpvSNP
StartedAt: 2022-03-17 16:06:25 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:07:47 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 82.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cpvSNP
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'cpvSNP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cpvSNP'
    finding HTML links ... done
    GLOSSIResult-class                      html  
    GLOSSIResultCollection-class            html  
    GeneSetResult-class                     html  
    GeneSetResultCollection-class           html  
    VEGASResult-class                       html  
    VEGASResultCollection-class             html  
    assocPvalBySetPlot                      html  
    createArrayData                         html  
    degreesOfFreedom-method                 html  
    exampleArrayData                        html  
    geneSetAnalysis                         html  
    geneSetName-methods                     html  
    geneSets                                html  
    geneToSNPList                           html  
    glossi                                  html  
    glossiMarginal                          html  
    pValue-method                           html  
    plotPvals                               html  
    show-methods                            html  
    simulate_chisq                          html  
    simulatedStats-method                   html  
    statistic-methods                       html  
    vegas                                   html  
    vegasMarginal                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cpvSNP)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'bumphunter' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  no package 'goseq' was found
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SGSeq' is missing or broken
 done