Charlotte Soneson
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/compcodeR |
| git_branch: master |
| git_last_commit: 730c4d0 |
| git_last_commit_date: 2022-01-24 06:27:05 -0400 (Mon, 24 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:14 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the compcodeR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/compcodeR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 379/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| compcodeR 1.31.1 (landing page) Charlotte Soneson
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: compcodeR |
| Version: 1.31.1 |
| Command: rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=compcodeR.buildbin-libdir compcodeR_1.31.1.tar.gz |
| StartedAt: 2022-03-17 21:01:43 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:02:59 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 76.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: compcodeR_1.31.1.zip |
| PackageFileSize: 2.729 MiB |
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### Running command:
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### rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=compcodeR.buildbin-libdir compcodeR_1.31.1.tar.gz
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* installing *source* package 'compcodeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'compcodeR'
finding HTML links ... done
DESeq2.createRmd html
DESeq2.length.createRmd html
DSS.createRmd html
EBSeq.createRmd html
NBPSeq.createRmd html
NB_to_PLN html
NOISeq.prenorm.createRmd html
TCC.createRmd html
add_replicates html
baySeq.createRmd html
checkDataObject html
checkParamMatrix html
checkParamVector html
checkSpecies html
checkTableConsistency html
check_compData html
check_compData_results html
check_phyloCompData html
compData-class html
compData html
compcodeR-package html
computeFactorLengths html
convertListTocompData html
convertListTophyloCompData html
convertcompDataToList html
convertphyloCompDataToList html
edgeR.GLM.createRmd html
edgeR.exact.createRmd html
extract_results_phylolm html
generateCodeHTMLs html
generateLengths html
generateLengthsPhylo html
generateSyntheticData html
getNegativeBinomialDispersion html
getNegativeBinomialMean html
getNegativeBinomialParameters html
getTree html
get_model_factor html
get_poisson_log_normal_parameters html
lengthNorm.limma.createRmd html
listcreateRmd html
logcpm.limma.createRmd html
nEffNaive html
nEffRatio html
phyloCompData-class html
phyloCompData html
phyloCompDataFromCompData html
phylolm.createRmd html
phylolm_analysis html
runComparison html
runComparisonGUI html
runDiffExp html
scale_variance_process html
show-compData-method html
show-phyloCompData-method html
show_compData html
simulateData html
simulateDataPhylo html
simulatePhyloPoissonLogNormal html
sqrtcpm.limma.createRmd html
summarizeSyntheticDataSet html
ttest.createRmd html
voom.limma.createRmd html
voom.ttest.createRmd html
writeNormalization html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'compcodeR' as compcodeR_1.31.1.zip
* DONE (compcodeR)