Liuba Nausicaa Martino
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/TFARM |
| git_branch: master |
| git_last_commit: a50c3b0 |
| git_last_commit_date: 2021-11-21 01:00:03 -0400 (Sun, 21 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:51 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TFARM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFARM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1951/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFARM 1.17.1 (landing page) Liuba Nausicaa Martino
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: TFARM |
| Version: 1.17.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TFARM.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings TFARM_1.17.1.tar.gz |
| StartedAt: 2022-03-17 20:28:04 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:30:02 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 118.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TFARM.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TFARM.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings TFARM_1.17.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/TFARM.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TFARM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TFARM' version '1.17.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TFARM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rulesTF0 5.39 0.17 5.57
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
TFARM.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TFARM
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'TFARM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TFARM'
finding HTML links ... done
DELTA html
IComp html
IMP html
IMP_Z html
IPCA html
I_c_2 html
MCF7_chr1 html
TF_Imp html
distribViz html
heatI html
imp_FOSL2 html
items html
itemset html
p_TFs html
presAbs html
r_FOSL2 html
r_TEAD4 html
r_noFOSL2 html
rulesGen html
rulesTF html
rulesTF0 html
search_rule html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFARM)
Making 'packages.html' ... done
TFARM.Rcheck/TFARM-Ex.timings
| name | user | system | elapsed | |
| DELTA | 0 | 0 | 0 | |
| IComp | 0.03 | 0.02 | 0.05 | |
| IMP | 0.00 | 0.01 | 0.01 | |
| IMP_Z | 0 | 0 | 0 | |
| IPCA | 0.02 | 0.00 | 0.02 | |
| I_c_2 | 0 | 0 | 0 | |
| MCF7_chr1 | 0.04 | 0.00 | 0.05 | |
| TF_Imp | 0 | 0 | 0 | |
| distribViz | 0.05 | 0.00 | 0.04 | |
| heatI | 0.06 | 0.02 | 0.08 | |
| imp_FOSL2 | 0 | 0 | 0 | |
| items | 0 | 0 | 0 | |
| itemset | 0 | 0 | 0 | |
| p_TFs | 0.00 | 0.02 | 0.02 | |
| presAbs | 0.52 | 0.01 | 0.53 | |
| r_FOSL2 | 0.00 | 0.02 | 0.01 | |
| r_TEAD4 | 0 | 0 | 0 | |
| r_noFOSL2 | 0 | 0 | 0 | |
| rulesGen | 0.59 | 0.01 | 0.61 | |
| rulesTF | 0.10 | 0.02 | 0.11 | |
| rulesTF0 | 5.39 | 0.17 | 5.57 | |