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This page was generated on 2022-03-18 11:08:50 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for TCGAbiolinks on riesling1


To the developers/maintainers of the TCGAbiolinks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1942/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAbiolinks 2.23.5  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/TCGAbiolinks
git_branch: master
git_last_commit: c4ad287
git_last_commit_date: 2022-02-17 10:52:29 -0400 (Thu, 17 Feb 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: TCGAbiolinks
Version: 2.23.5
Command: rm -rf TCGAbiolinks.buildbin-libdir && mkdir TCGAbiolinks.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=TCGAbiolinks.buildbin-libdir TCGAbiolinks_2.23.5.tar.gz
StartedAt: 2022-03-17 21:44:04 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:45:37 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 92.7 seconds
RetCode: 0
Status:   OK  
PackageFile: TCGAbiolinks_2.23.5.zip
PackageFileSize: 54.01 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TCGAbiolinks.buildbin-libdir && mkdir TCGAbiolinks.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=TCGAbiolinks.buildbin-libdir TCGAbiolinks_2.23.5.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'TCGAbiolinks' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TCGAbiolinks'
    finding HTML links ... done
    BRCA_rnaseqv2                           html  
    GDCdownload                             html  
    GDCprepare                              html  
    GDCprepare_clinic                       html  
    GDCquery                                html  
    GDCquery_ATAC_seq                       html  
    GDCquery_Maf                            html  
    GDCquery_clinic                         html  
    GeneSplitRegulon                        html  
    GenesCutID                              html  
    PCBC_stemSig                            html  
    PanCancerAtlas_subtypes                 html  
    TCGAVisualize_volcano                   html  
    TCGA_MolecularSubtype                   html  
    TCGAanalyze_Clustering                  html  
    TCGAanalyze_DEA                         html  
    TCGAanalyze_DEA_Affy                    html  
    TCGAanalyze_DMC                         html  
    TCGAanalyze_EA                          html  
    TCGAanalyze_EAcomplete                  html  
    TCGAanalyze_Filtering                   html  
    TCGAanalyze_LevelTab                    html  
    TCGAanalyze_Normalization               html  
    TCGAanalyze_Pathview                    html  
    TCGAanalyze_Preprocessing               html  
    TCGAanalyze_Stemness                    html  
    TCGAanalyze_SurvivalKM                  html  
    TCGAanalyze_analyseGRN                  html  
    TCGAanalyze_networkInference            html  
    TCGAanalyze_survival                    html  
    TCGAbatch_Correction                    html  
    TCGAbiolinks                            html  
    TCGAprepare_Affy                        html  
    TCGAquery_MatchedCoupledSampleTypes     html  
    TCGAquery_SampleTypes                   html  
    TCGAquery_recount2                      html  
    TCGAquery_subtype                       html  
    TCGAtumor_purity                        html  
    TCGAvisualize_BarPlot                   html  
    TCGAvisualize_EAbarplot                 html  
    TCGAvisualize_Heatmap                   html  
    TCGAvisualize_PCA                       html  
    TCGAvisualize_SurvivalCoxNET            html  
    TCGAvisualize_meanMethylation           html  
    TCGAvisualize_oncoprint                 html  
    TCGAvisualize_starburst                 html  
    TabSubtypesCol_merged                   html  
    Tumor.purity                            html  
    UseRaw_afterFilter                      html  
    batch.info                              html  
    bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf
                                            html  
    chol_maf                                html  
    classification                          html  
    clinBRCA                                html  
    clinical.biotab                         html  
    colDataPrepare                          html  
    dataBRCA                                html  
    dataDEGsFiltLevel                       html  
    dataREAD                                html  
    dataREAD_df                             html  
    dmc.non.parametric                      html  
    dmc.non.parametric.se                   html  
    gaiaCNVplot                             html  
    gbm.exp.harmonized                      html  
    gbm.exp.legacy                          html  
    geneInfo                                html  
    geneInfoHT                              html  
    get.GRCh.bioMart                        html  
    getAdjacencyBiogrid                     html  
    getDataCategorySummary                  html  
    getGDCInfo                              html  
    getGDCprojects                          html  
    getGistic                               html  
    getLinkedOmicsData                      html  
    getMC3MAF                               html  
    getManifest                             html  
    getNbCases                              html  
    getNbFiles                              html  
    getProjectSummary                       html  
    getResults                              html  
    getSampleFilesSummary                   html  
    getTSS                                  html  
    get_IDs                                 html  
    ggbiplot                                html  
    gliomaClassifier                        html  
    isServeOK                               html  
    matchedMetExp                           html  
    met.gbm.27k                             html  
    msi_results                             html  
    pancan2018                              html  
    splitAPICall                            html  
    tabSurvKMcompleteDEGs                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'TCGAbiolinks' as TCGAbiolinks_2.23.5.zip
* DONE (TCGAbiolinks)