Back to Multiple platform build/check report for BioC 3.15
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-03-18 11:08:40 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SeqGSEA on riesling1


To the developers/maintainers of the SeqGSEA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqGSEA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1776/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqGSEA 1.35.0  (landing page)
Xi Wang
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/SeqGSEA
git_branch: master
git_last_commit: 2d48582
git_last_commit_date: 2021-10-26 12:07:38 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SeqGSEA
Version: 1.35.0
Command: rm -rf SeqGSEA.buildbin-libdir && mkdir SeqGSEA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SeqGSEA.buildbin-libdir SeqGSEA_1.35.0.tar.gz
StartedAt: 2022-03-17 21:39:04 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:41:08 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 124.2 seconds
RetCode: 0
Status:   OK  
PackageFile: SeqGSEA_1.35.0.zip
PackageFileSize: 1.731 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SeqGSEA.buildbin-libdir && mkdir SeqGSEA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SeqGSEA.buildbin-libdir SeqGSEA_1.35.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'SeqGSEA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SeqGSEA'
    finding HTML links ... done
    DENBStat4GSEA                           html  
    DENBStatPermut4GSEA                     html  
    DENBTest                                html  
    DEpermutePval                           html  
    DEscore                                 html  
    DSpermute4GSEA                          html  
    DSpermutePval                           html  
    DSresultExonTable                       html  
    DSresultGeneTable                       html  
    GSEAresultTable                         html  
    GSEnrichAnalyze                         html  
    GS_example                              html  
    RCS_example                             html  
    ReadCountSet-class                      html  
    finding level-2 HTML links ... done

    SeqGSEA-package                         html  
    SeqGeneSet-class                        html  
    calES                                   html  
    calES.perm                              html  
    convertEnsembl2Symbol                   html  
    convertSymbol2Ensembl                   html  
    counts-methods                          html  
    estiExonNBstat                          html  
    estiGeneNBstat                          html  
    exonID                                  html  
    exonTestability                         html  
    geneID                                  html  
    geneList                                html  
    genePermuteScore                        html  
    geneScore                               html  
    geneSetDescs                            html  
    geneSetNames                            html  
    geneSetSize                             html  
    geneTestability                         html  
    genpermuteMat                           html  
    getGeneCount                            html  
    label                                   html  
    loadExonCountData                       html  
    loadGenesets                            html  
    newGeneSets                             html  
    newReadCountSet                         html  
    normES                                  html  
    normFactor                              html  
    plotES                                  html  
    plotGeneScore                           html  
    plotSig                                 html  
    plotSigGeneSet                          html  
    rankCombine                             html  
    runDESeq                                html  
    runSeqGSEA                              html  
    scoreNormalization                      html  
    signifES                                html  
    size                                    html  
    subsetByGenes                           html  
    topDEGenes                              html  
    topDSExons                              html  
    topDSGenes                              html  
    topGeneSets                             html  
    writeScores                             html  
    writeSigGeneSet                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SeqGSEA' as SeqGSEA_1.35.0.zip
* DONE (SeqGSEA)