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This page was generated on 2022-03-18 11:08:29 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for Ringo on riesling1


To the developers/maintainers of the Ringo package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Ringo.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1618/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Ringo 1.59.0  (landing page)
J. Toedling
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/Ringo
git_branch: master
git_last_commit: ce7f806
git_last_commit_date: 2021-10-26 11:51:01 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Ringo
Version: 1.59.0
Command: rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=Ringo.buildbin-libdir Ringo_1.59.0.tar.gz
StartedAt: 2022-03-17 21:33:58 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:35:33 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 95.4 seconds
RetCode: 0
Status:   OK  
PackageFile: Ringo_1.59.0.zip
PackageFileSize: 2.127 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=Ringo.buildbin-libdir Ringo_1.59.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'Ringo' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
     int * x, nval, hs, is, i;
                        ^~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c mmedian.cpp -o mmedian.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c region_overlap.c -o region_overlap.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c ringo_init.c -o ringo_init.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'ls' from package 'base' in package 'Ringo'
** help
*** installing help indices
  converting help for package 'Ringo'
    finding HTML links ... done
    Ringo-internal                          html  
    arrayImage                              html  
    asExprSet                               html  
    autocorr                                html  
    cherByThreshold                         html  
    cherClass                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/help/Cher.html
    chipAlongChrom                          html  
    chipAlongChromOld                       html  
    computeRunningMedians                   html  
    compute_gc                              html  
    compute_sliding_t                       html  
    corrPlot                                html  
    exportCherList                          html  
    extractProbeAnno                        html  
    features2Probes                         html  
    findChersOnSmoothed                     html  
    ftr2xys                                 html  
    getFeats                                html  
    newCER                                  html  
    nimblegenNorm                           html  
    nonzero                                 html  
    plotAutocorr                            html  
    plotBM                                  html  
    plot_cher                               html  
    posToProbeAnnoEnvironment               html  
    preprocess                              html  
    probeAnnoClass                          html  
    qopS4                                   html  
    quantilesOverPositions                  html  
    readNimblegen                           html  
    regionoverlap                           html  
    relateCERs                              html  
    sigGOTable                              html  
    sliding_meansd                          html  
    sliding_quantile                        html  
    twoGaussiansNull                        html  
    upperBoundNull                          html  
    validProbeAnno                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Ringo' as Ringo_1.59.0.zip
* DONE (Ringo)