Mike Smith
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/Rhdf5lib |
| git_branch: master |
| git_last_commit: f05db54 |
| git_last_commit_date: 2022-01-31 11:37:41 -0400 (Mon, 31 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:29 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Rhdf5lib package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rhdf5lib.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1608/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rhdf5lib 1.17.3 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Rhdf5lib |
| Version: 1.17.3 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib |
| StartedAt: 2022-03-17 15:26:17 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:27:28 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 71.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Rhdf5lib' ...
** using staged installation
untarring hdf5_headers_1.10.7.tar.gz ...
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
mkdir -p "D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64" "D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
"D:/biocbuild/bbs-3.15-bioc/R/bin/x64/Rscript.exe" "../tools/copy_hdf5_files.R" "D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64" "D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
Copying libraries
Copying headers
Done
"D:/biocbuild/bbs-3.15-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" "D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64"
Downloading libcurl etc
Copying libraries
[1] "D:\\biocbuild\\bbs-3.15-bioc\\tmpdir\\RtmpQZ82N7/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a"
[2] "D:\\biocbuild\\bbs-3.15-bioc\\tmpdir\\RtmpQZ82N7/libcurl/libcurl-7.64.1/lib/x64/libcurl.a"
[3] "D:\\biocbuild\\bbs-3.15-bioc\\tmpdir\\RtmpQZ82N7/libcurl/libcurl-7.64.1/lib/x64/libssh2.a"
[4] "D:\\biocbuild\\bbs-3.15-bioc\\tmpdir\\RtmpQZ82N7/libcurl/libcurl-7.64.1/lib/x64/libssl.a"
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -I"D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Rhdf5lib.c -o Rhdf5lib.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64/libhdf5.a D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64/libszip.a -lpsapi -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rhdf5lib'
finding HTML links ... done
Rhdf5lib html
dot-getDynamicLinks html
dot-getSzipLoc html
getHdf5Version html
pkgconfig html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rhdf5lib)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'SNPediaR' is missing or broken
done