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This page was generated on 2022-03-18 11:08:26 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for ReactomeGSA on riesling1


To the developers/maintainers of the ReactomeGSA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1566/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeGSA 1.9.1  (landing page)
Johannes Griss
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: master
git_last_commit: 67b778a
git_last_commit_date: 2021-11-05 15:55:56 -0400 (Fri, 05 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: ReactomeGSA
Version: 1.9.1
Command: rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=ReactomeGSA.buildbin-libdir ReactomeGSA_1.9.1.tar.gz
StartedAt: 2022-03-17 21:32:39 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:33:55 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 76.1 seconds
RetCode: 0
Status:   OK  
PackageFile: ReactomeGSA_1.9.1.zip
PackageFileSize: 521.9 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=ReactomeGSA.buildbin-libdir ReactomeGSA_1.9.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'ReactomeGSA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'analyse_sc_clusters' with signature 'object="Seurat"': no definition for class "Seurat"
in method for 'analyse_sc_clusters' with signature 'object="SingleCellExperiment"': no definition for class "SingleCellExperiment"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="EList"': no definition for class "EList"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="DGEList"': no definition for class "DGEList"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
  converting help for package 'ReactomeGSA'
    finding HTML links ... done
    ReactomeAnalysisRequest                 html  
    ReactomeAnalysisResult-class            html  
    add_dataset-ReactomeAnalysisRequest-DGEList-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-EList-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-ExpressionSet-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-data.frame-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-matrix-method
                                            html  
    add_dataset                             html  
    analyse_sc_clusters-Seurat-method       html  
    analyse_sc_clusters-SingleCellExperiment-method
                                            html  
    analyse_sc_clusters                     html  
    break_names                             html  
    checkRequestValidity                    html  
    check_reactome_url                      html  
    convert_reactome_result                 html  
    data_frame_as_string                    html  
    get_fc_for_dataset                      html  
    get_is_sig_dataset                      html  
    get_reactome_analysis_result            html  
    get_reactome_analysis_status            html  
    get_reactome_data_types                 html  
    get_reactome_methods                    html  
    get_result-ReactomeAnalysisResult-method
                                            html  
    get_result                              html  
    is_gsva_result                          html  
    names-ReactomeAnalysisResult-method     html  
    open_reactome-ReactomeAnalysisResult-method
                                            html  
    open_reactome                           html  
    pathways-ReactomeAnalysisResult-method
                                            html  
    pathways                                html  
    perform_reactome_analysis               html  
    plot_correlations-ReactomeAnalysisResult-method
                                            html  
    plot_correlations                       html  
    plot_gsva_heatmap-ReactomeAnalysisResult-method
                                            html  
    plot_gsva_heatmap                       html  
    plot_gsva_pathway-ReactomeAnalysisResult-method
                                            html  
    plot_gsva_pathway                       html  
    plot_gsva_pca-ReactomeAnalysisResult-method
                                            html  
    plot_gsva_pca                           html  
    plot_heatmap-ReactomeAnalysisResult-method
                                            html  
    plot_heatmap                            html  
    plot_volcano-ReactomeAnalysisResult-method
                                            html  
    plot_volcano                            html  
    print-ReactomeAnalysisRequest-method    html  
    print-ReactomeAnalysisResult-method     html  
    reactome_links-ReactomeAnalysisResult-method
                                            html  
    reactome_links                          html  
    remove_dataset-ReactomeAnalysisRequest-method
                                            html  
    remove_dataset                          html  
    result_types-ReactomeAnalysisResult-method
                                            html  
    result_types                            html  
    set_method-ReactomeAnalysisRequest-method
                                            html  
    set_method                              html  
    set_parameters-ReactomeAnalysisRequest-method
                                            html  
    set_parameters                          html  
    show-ReactomeAnalysisRequest-method     html  
    show-ReactomeAnalysisResult-method      html  
    start_reactome_analysis                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ReactomeGSA' as ReactomeGSA_1.9.1.zip
* DONE (ReactomeGSA)