| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:08:23 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the QSutils package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/QSutils.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1511/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| QSutils 1.13.0 (landing page) Mercedes Guerrero-Murillo
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: QSutils |
| Version: 1.13.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:QSutils.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings QSutils_1.13.0.tar.gz |
| StartedAt: 2022-03-17 19:58:34 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:59:50 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 76.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: QSutils.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:QSutils.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings QSutils_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/QSutils.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'QSutils/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'QSutils' version '1.13.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'QSutils' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
QSutils.Rcheck/00install.out
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL QSutils
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'QSutils' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'QSutils'
finding HTML links ... done
Collapse html
ConsSeq html
CorrectGapsAndNs html
DBrule html
DNA.dist html
DSFT html
Diverge html
DottedAlignment html
FAD html
FreqMat html
GenerateVars html
GenotypeStandards_A-H.fas html
GetInfProfile html
GetQSData html
GetRandomSeq html
GiniSimpson html
HCq html
Hill html
IntersectStrandHpls html
MutationFreq html
MutsTbl html
NucleotideDiversity html
PolyDist html
QSutils-package html
Rao html
ReadAmplSeqs html
Renyi html
ReportVariants html
SegSites html
Shannon html
SortByMutations html
SummaryMuts html
TotalMutations html
Toy.GapsAndNs.fna html
ToyData_10_50_1000.fna html
ToyData_FWReads.fna html
ToyData_RVReads.fna html
UniqueMutations html
Unknown-Genotype.fna html
fn.ab html
geom.series html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (QSutils)
Making 'packages.html' ... done
QSutils.Rcheck/QSutils-Ex.timings
| name | user | system | elapsed | |
| Collapse | 0.08 | 0.00 | 0.07 | |
| ConsSeq | 0.03 | 0.00 | 0.04 | |
| CorrectGapsAndNs | 0.02 | 0.00 | 0.01 | |
| DBrule | 0.03 | 0.00 | 0.03 | |
| DNA.dist | 0.01 | 0.00 | 0.02 | |
| DSFT | 0 | 0 | 0 | |
| Diverge | 0 | 0 | 0 | |
| DottedAlignment | 0.02 | 0.00 | 0.01 | |
| FAD | 0 | 0 | 0 | |
| FreqMat | 0.02 | 0.00 | 0.02 | |
| GenerateVars | 0 | 0 | 0 | |
| GenotypeStandards_A-H.fas | 0.01 | 0.00 | 0.02 | |
| GetInfProfile | 0.02 | 0.00 | 0.01 | |
| GetQSData | 0.48 | 0.07 | 0.55 | |
| GetRandomSeq | 0 | 0 | 0 | |
| GiniSimpson | 0 | 0 | 0 | |
| HCq | 0 | 0 | 0 | |
| Hill | 0 | 0 | 0 | |
| IntersectStrandHpls | 0.05 | 0.00 | 0.05 | |
| MutationFreq | 0.44 | 0.03 | 0.47 | |
| MutsTbl | 0.01 | 0.00 | 0.01 | |
| NucleotideDiversity | 0 | 0 | 0 | |
| PolyDist | 0.02 | 0.00 | 0.02 | |
| Rao | 0.01 | 0.00 | 0.02 | |
| ReadAmplSeqs | 0.02 | 0.00 | 0.01 | |
| Renyi | 0 | 0 | 0 | |
| ReportVariants | 0.01 | 0.00 | 0.02 | |
| SegSites | 0 | 0 | 0 | |
| Shannon | 0 | 0 | 0 | |
| SortByMutations | 0.38 | 0.08 | 0.46 | |
| SummaryMuts | 0 | 0 | 0 | |
| TotalMutations | 0.01 | 0.00 | 0.01 | |
| Toy.GapsAndNs.fna | 0.04 | 0.00 | 0.03 | |
| ToyData_10_50_1000.fna | 0.01 | 0.00 | 0.02 | |
| ToyData_FWReads.fna | 0.03 | 0.02 | 0.05 | |
| ToyData_RVReads.fna | 0.05 | 0.02 | 0.06 | |
| UniqueMutations | 0 | 0 | 0 | |
| Unknown-Genotype.fna | 0 | 0 | 0 | |
| fn.ab | 0.02 | 0.00 | 0.02 | |
| geom.series | 0 | 0 | 0 | |