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This page was generated on 2022-04-12 11:07:06 -0400 (Tue, 12 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-03-17 r81925) -- "Unsuffered Consequences" 4379
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-03-17 r81925 ucrt) -- "Unsuffered Consequences" 4127
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-17 r81925) -- "Unsuffered Consequences" 4190
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for PrecisionTrialDrawer on palomino3


To the developers/maintainers of the PrecisionTrialDrawer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PrecisionTrialDrawer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1472/2113HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PrecisionTrialDrawer 1.11.0  (landing page)
Giorgio Melloni
Snapshot Date: 2022-04-11 13:55:11 -0400 (Mon, 11 Apr 2022)
git_url: https://git.bioconductor.org/packages/PrecisionTrialDrawer
git_branch: master
git_last_commit: 52b19d2
git_last_commit_date: 2021-10-26 12:48:33 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PrecisionTrialDrawer
Version: 1.11.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_1.11.0.tar.gz
StartedAt: 2022-04-12 02:18:13 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 02:21:42 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 209.0 seconds
RetCode: 0
Status:   OK  
CheckDir: PrecisionTrialDrawer.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/PrecisionTrialDrawer.Rcheck'
* using R Under development (unstable) (2022-03-17 r81925 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'PrecisionTrialDrawer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PrecisionTrialDrawer' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PrecisionTrialDrawer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
newCancerPanel 9.23   0.18   13.82
panelDesigner  7.64   0.03   12.20
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

PrecisionTrialDrawer.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PrecisionTrialDrawer
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'PrecisionTrialDrawer' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package keeps a record of temporary installation path
* DONE (PrecisionTrialDrawer)

Tests output


Example timings

PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings

nameusersystemelapsed
CancerPanel-class000
PrecisionTrialDrawer-package0.160.000.16
appendRepo0.540.020.55
coocMutexPlot2.100.082.19
coveragePlot0.220.010.23
coverageStackPlot0.270.030.30
cpArguments0.030.000.03
cpData0.090.000.09
cpDataSubset0.020.000.02
cpDesign0.070.000.08
cpFreq0.330.030.36
cpObj0.640.020.66
cpObj20.130.000.12
dataExtractor0.290.000.30
filterFusions0.330.000.33
filterMutations0.780.000.78
getAlterations0.320.020.40
newCancerPanel 9.23 0.1813.82
panelDesigner 7.64 0.0312.20
panelOptimizer000
panelexample0.020.000.02
propPowerSampleSize0.730.050.78
saturationPlot1.580.051.62
showCancerStudy0.010.000.03
showTumorType0.050.000.05
subsetAlterations0.450.000.45
survPowerSampleSize0.520.000.52
survPowerSampleSize1Arm0.560.030.59