Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:08:20 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the PPInfer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PPInfer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1453/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PPInfer 1.21.1 (landing page) Dongmin Jung
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: PPInfer |
Version: 1.21.1 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PPInfer.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PPInfer_1.21.1.tar.gz |
StartedAt: 2022-03-17 19:54:23 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 19:59:10 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 286.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PPInfer.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PPInfer.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PPInfer_1.21.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/PPInfer.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'PPInfer/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'PPInfer' version '1.21.1' * checking package namespace information ... OK * checking package dependencies ... NOTE Depends: includes the non-default packages: 'biomaRt', 'fgsea', 'kernlab', 'ggplot2', 'igraph', 'STRINGdb', 'yeastExpData' Adding so many packages to the search path is excessive and importing selectively is preferable. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PPInfer' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ppi.infer.human 33.40 1.62 48.78 ppi.infer.mouse 23.60 1.94 40.39 GSEA.barplot 1.61 0.05 6.08 enrich.net 0.99 0.06 5.17 ORA.barplot 0.22 0.00 22.56 ORA 0.14 0.01 22.53 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/PPInfer.Rcheck/00check.log' for details.
PPInfer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PPInfer ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'PPInfer' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PPInfer' finding HTML links ... done GSEA.barplot html ORA html ORA.barplot html PPInfer-package html enrich.net html net.infer html net.infer.ST html net.kernel html ppi.infer.human html ppi.infer.mouse html self.train.kernel html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PPInfer) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'kebabs' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'Rmagpie' is missing or broken done
PPInfer.Rcheck/PPInfer-Ex.timings
name | user | system | elapsed | |
GSEA.barplot | 1.61 | 0.05 | 6.08 | |
ORA | 0.14 | 0.01 | 22.53 | |
ORA.barplot | 0.22 | 0.00 | 22.56 | |
enrich.net | 0.99 | 0.06 | 5.17 | |
net.infer | 1.14 | 0.02 | 1.16 | |
net.infer.ST | 0.05 | 0.00 | 0.05 | |
net.kernel | 0.02 | 0.00 | 0.02 | |
ppi.infer.human | 33.40 | 1.62 | 48.78 | |
ppi.infer.mouse | 23.60 | 1.94 | 40.39 | |
self.train.kernel | 0.07 | 0.00 | 0.08 | |