Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:08:12 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for OGRE on riesling1


To the developers/maintainers of the OGRE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OGRE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1324/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OGRE 0.99.8  (landing page)
Sven Berres
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/OGRE
git_branch: master
git_last_commit: 867a785
git_last_commit_date: 2022-03-08 05:34:17 -0400 (Tue, 08 Mar 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: OGRE
Version: 0.99.8
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OGRE
StartedAt: 2022-03-17 16:16:37 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:18:03 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 85.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OGRE
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'OGRE' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE'
** help
*** installing help indices
  converting help for package 'OGRE'
    finding HTML links ... done
    OGRE-package                            html  
    OGREDataSet                             html  
    OGREDataSetFromDir                      html  
    SHREC                                   html  
    addDataSetFromHub                       html  
    addGRanges                              html  
    extendGRanges                           html  
    extractPromoters                        html  
    fOverlaps                               html  
    gvizPlot                                html  
    listPredefinedDataSets                  html  
    loadAnnotations                         html  
    makeExampleGRanges                      html  
    makeExampleOGREDataSet                  html  
    plotHist                                html  
    readDataSetFromFolder                   html  
    readQuery                               html  
    readSubject                             html  
    subsetGRanges                           html  
    sumPlot                                 html  
    summarizeOverlap                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE'
** testing if installed package keeps a record of temporary installation path
* DONE (OGRE)
Making 'packages.html' ... done