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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MetaCyto.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MetaCyto_1.17.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/MetaCyto.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MetaCyto/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaCyto' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaCyto' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
collectData: no visible binding for global variable 'parameter_name'
collectData: no visible binding for global variable 'value'
panelSummary: no visible binding for global variable 'antibodies'
panelSummary: no visible binding for global variable 'value'
plotGA: no visible binding for global variable 'lower'
plotGA: no visible binding for global variable 'upper'
searchCluster : <anonymous>: no visible binding for global variable
  'triS'
Undefined global functions or variables:
  antibodies lower parameter_name triS upper value
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
autoCluster.batch   84.12  78.71  162.95
labelCluster        72.14  54.72  127.11
searchCluster.batch 20.64  17.69   38.52
searchCluster        7.44   6.56   14.01
densityPlot          6.73   5.72   12.47
clusterStats         6.13   5.61   11.75
flowSOM.MC           9.50   1.62   11.14
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/MetaCyto.Rcheck/00check.log'
for details.

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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MetaCyto
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MetaCyto' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MetaCyto'
    finding HTML links ... done
    autoCluster.batch                       html  
    clusterStats                            html  
    collectData                             html  
    densityPlot                             html  
    fcsInfoParser                           html  
    filterLabels                            html  
    findCutoff                              html  
    flowHC                                  html  
    flowSOM.MC                              html  
    glmAnalysis                             html  
    labelCluster                            html  
    labelSummary                            html  
    markerFinder                            html  
    metaAnalysis                            html  
    nameUpdator                             html  
    panelSummary                            html  
    plotGA                                  html  
    preprocessing                           html  
    preprocessing.batch                     html  
    sampleInfoParser                        html  
    searchCluster                           html  
    searchCluster.batch                     html  
    set2Frame                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MetaCyto)
Making 'packages.html' ... done