Britta Velten
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/MOFA2 |
| git_branch: master |
| git_last_commit: 4f1fbdb |
| git_last_commit_date: 2021-12-16 16:14:21 -0400 (Thu, 16 Dec 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:04 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MOFA2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MOFA2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1195/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MOFA2 1.5.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MOFA2 |
| Version: 1.5.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MOFA2 |
| StartedAt: 2022-03-17 15:52:41 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:53:55 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 74.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MOFA2
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MOFA2' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'rownames' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames' from package 'base' in package 'MOFA2'
Creating a generic function for 'nrow' from package 'base' in package 'MOFA2'
Creating a generic function for 'ncol' from package 'base' in package 'MOFA2'
Creating a generic function for 'rownames<-' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames<-' from package 'base' in package 'MOFA2'
** help
*** installing help indices
converting help for package 'MOFA2'
finding HTML links ... done
MOFA html
add_mofa_factors_to_seurat html
calculate_contribution_scores html
calculate_variance_explained html
calculate_variance_explained_per_sample
html
cluster_samples html
compare_elbo html
finding level-2 HTML links ... done
compare_factors html
correlate_factors_with_covariates html
covariates_names html
create_mofa html
create_mofa_from_MultiAssayExperiment html
create_mofa_from_Seurat html
create_mofa_from_SingleCellExperiment html
create_mofa_from_df html
create_mofa_from_matrix html
factors_names html
features_metadata html
features_names html
get_covariates html
get_data html
get_default_data_options html
get_default_mefisto_options html
get_default_model_options html
get_default_stochastic_options html
get_default_training_options html
get_dimensions html
get_elbo html
get_expectations html
get_factors html
get_group_kernel html
get_imputed_data html
get_interpolated_factors html
get_lengthscales html
get_scales html
get_variance_explained html
get_weights html
groups_names html
impute html
interpolate_factors html
load_model html
make_example_data html
pipe html
plot_alignment html
plot_ascii_data html
plot_data_heatmap html
plot_data_overview html
plot_data_scatter html
plot_data_vs_cov html
plot_dimred html
plot_enrichment html
plot_enrichment_detailed html
plot_enrichment_heatmap html
plot_factor html
plot_factor_cor html
plot_factors html
plot_factors_vs_cov html
plot_group_kernel html
plot_interpolation_vs_covariate html
plot_sharedness html
plot_smoothness html
plot_top_weights html
plot_variance_explained html
plot_variance_explained_by_covariates html
plot_variance_explained_per_feature html
plot_weights html
plot_weights_heatmap html
plot_weights_scatter html
predict html
prepare_mofa html
run_enrichment html
run_mofa html
run_tsne html
run_umap html
samples_metadata html
samples_names html
select_model html
set_covariates html
subset_factors html
subset_features html
subset_groups html
subset_samples html
subset_views html
summarise_factors html
views_names html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MOFA2)
Making 'packages.html' ... done