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This page was generated on 2022-03-18 11:07:40 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for GOSim on riesling1


To the developers/maintainers of the GOSim package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOSim.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 807/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOSim 1.33.0  (landing page)
Holger Froehlich
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/GOSim
git_branch: master
git_last_commit: 27b7ae9
git_last_commit_date: 2021-10-26 12:09:55 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'topGO' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GOSim
Version: 1.33.0
Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSim.buildbin-libdir GOSim_1.33.0.tar.gz
StartedAt: 2022-03-17 21:12:45 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:13:45 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 60.4 seconds
RetCode: 0
Status:   OK  
PackageFile: GOSim_1.33.0.zip
PackageFileSize: 860.3 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSim.buildbin-libdir GOSim_1.33.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'GOSim' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"  `D:/biocbuild/bbs-3.15-bioc/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"`   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
Loading required package: Rcpp
installing to D:/biocbuild/bbs-3.15-bioc/meat/GOSim.buildbin-libdir/00LOCK-GOSim/00new/GOSim/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GOSim'
    finding HTML links ... done
    GOenrichment                            html  
    IC                                      html  
    calc.diffusion.kernel                   html  
    calcICs                                 html  
    evaluateClustering                      html  
    filterGO                                html  
    getAncestors                            html  
    getChildren                             html  
    getDisjCommAnc                          html  
    getGOGraph                              html  
    getGOInfo                               html  
    getGeneFeatures                         html  
    getGeneFeaturesPrototypes               html  
    getGeneSim                              html  
    getGeneSimPrototypes                    html  
    getMinimumSubsumer                      html  
    getOffsprings                           html  
    getParents                              html  
    getTermSim                              html  
    internal                                html  
    selectPrototypes                        html  
    setEnrichmentFactors                    html  
    setEvidenceLevel                        html  
    setOntology                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GOSim' as GOSim_1.33.0.zip
* DONE (GOSim)