Attila Gabor
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/CellNOptR |
| git_branch: master |
| git_last_commit: 35bd6c8 |
| git_last_commit_date: 2022-03-16 05:38:12 -0400 (Wed, 16 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:08 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CellNOptR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellNOptR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 270/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CellNOptR 1.41.1 (landing page) Attila Gabor
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: CellNOptR |
| Version: 1.41.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CellNOptR |
| StartedAt: 2022-03-17 15:45:39 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:47:02 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 83.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CellNOptR
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CellNOptR' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -I./include -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c simulatorT1.c -o simulatorT1.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -I./include -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c simulatorTN.c -o simulatorTN.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CellNOptR.dll tmp.def simulatorT1.o simulatorTN.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CellNOptR'
finding HTML links ... done
CNORbool html
CNORwrap html
CNOdata html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/help/cnodata.html
CNOlist-class html
CNOlist-methods html
CNOlistDREAM html
CNOlistToy html
CNOlistToy2 html
CNOlistToyMMB html
CellNOptR-package html
DreamModel html
ToyModel html
ToyModel2 html
buildBitString html
build_sif_table_from_rule html
cSimulator html
checkSignals html
compressModel html
computeScoreT1 html
computeScoreTN html
createAndRunILP html
createILPBitstringAll html
create_binaries html
crossInhibitedData html
crossvalidateBoolean html
cutAndPlot html
cutAndPlotResultsT1 html
cutAndPlotResultsTN html
cutCNOlist html
cutModel html
cutNONC html
cutSimList html
defaultParameters html
exhaustive html
expandGates html
findNONC html
gaBinaryT1 html
gaBinaryT2 html
gaBinaryTN html
getFit html
graph2sif html
ilpBinaryT1 html
ilpBinaryT2 html
ilpBinaryTN html
indexFinder html
internals html
invokeCPLEX html
makeCNOlist html
mapBack html
model2igraph html
model2sif html
normaliseCNOlist html
pknmodel html
plot-methods html
plotCNOlist html
plotCNOlist2 html
plotCNOlistLarge html
plotCNOlistLargePDF html
plotCNOlistPDF html
plotFit html
plotModel html
plotOptimResults html
plotOptimResultsPDF html
plotOptimResultsPan html
prep4sim html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/help/prep4Sim.html
preprocessing html
randomizeCNOlist html
readBND html
readBNET html
readMIDAS html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/help/readMidas.html
readSBMLQual html
readSIF html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/help/readSIF.html
residualError html
sif2graph html
simulateT1 html
simulateTN html
simulatorT0 html
simulatorT1 html
simulatorT2 html
simulatorTN html
toSBML html
writeDot html
writeFile html
writeMIDAS html
writeNetwork html
writeObjectiveFunction html
writeReport html
writeSIF html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/help/writeSif.html
writeScaffold html
write_bounds html
write_constraints html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'BioMM' is missing or broken
done