Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:25 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ssize package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ssize.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1879/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ssize 1.68.0 (landing page) Gregory R. Warnes
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ssize |
Version: 1.68.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ssize.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ssize_1.68.0.tar.gz |
StartedAt: 2022-04-13 03:34:06 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 03:35:04 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 58.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ssize.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ssize.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ssize_1.68.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ssize.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ssize/DESCRIPTION' ... OK * this is package 'ssize' version '1.68.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ssize' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'xtable' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE crit.fn: no visible global function definition for 'pt' delta: no visible global function definition for 'power.t.test' delta.plot: no visible global function definition for 'ecdf' delta.plot: no visible global function definition for 'axis' delta.plot: no visible global function definition for 'par' delta.plot: no visible global function definition for 'lines' delta.plot: no visible global function definition for 'text' pow: no visible global function definition for 'power.t.test' power.plot: no visible global function definition for 'ecdf' power.plot: no visible global function definition for 'axis' power.plot: no visible global function definition for 'par' power.plot: no visible global function definition for 'lines' power.plot: no visible global function definition for 'text' power.t.test.FDR: no visible global function definition for 'uniroot' ssize: no visible global function definition for 'power.t.test' ssize.plot: no visible global function definition for 'ecdf' ssize.plot: no visible global function definition for 'axis' ssize.plot: no visible global function definition for 'par' ssize.plot: no visible global function definition for 'lines' ssize.plot: no visible global function definition for 'text' Undefined global functions or variables: axis ecdf lines par power.t.test pt text uniroot Consider adding importFrom("graphics", "axis", "lines", "par", "text") importFrom("stats", "ecdf", "power.t.test", "pt", "uniroot") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ssize.Rcheck/00check.log' for details.
ssize.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ssize_1.68.0.tar.gz && rm -rf ssize.buildbin-libdir && mkdir ssize.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ssize.buildbin-libdir ssize_1.68.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ssize_1.68.0.zip && rm ssize_1.68.0.tar.gz ssize_1.68.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 147k 100 147k 0 0 411k 0 --:--:-- --:--:-- --:--:-- 412k install for i386 * installing *source* package 'ssize' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ssize' finding HTML links ... done exp.sd html pow html power.t.test.FDR html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ssize' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ssize' as ssize_1.68.0.zip * DONE (ssize) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ssize' successfully unpacked and MD5 sums checked
ssize.Rcheck/examples_i386/ssize-Ex.timings
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ssize.Rcheck/examples_x64/ssize-Ex.timings
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