Steve Lianoglou
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/sparrow |
| git_branch: RELEASE_3_14 |
| git_last_commit: 7cde579 |
| git_last_commit_date: 2022-03-23 14:09:29 -0400 (Wed, 23 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:23 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the sparrow package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sparrow.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1839/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sparrow 1.0.3 (landing page) Steve Lianoglou
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sparrow |
| Version: 1.0.3 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sparrow_1.0.3.tar.gz && rm -rf sparrow.buildbin-libdir && mkdir sparrow.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparrow.buildbin-libdir sparrow_1.0.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sparrow_1.0.3.zip && rm sparrow_1.0.3.tar.gz sparrow_1.0.3.zip |
| StartedAt: 2022-04-12 07:10:52 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:12:44 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 111.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sparrow_1.0.3.tar.gz && rm -rf sparrow.buildbin-libdir && mkdir sparrow.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparrow.buildbin-libdir sparrow_1.0.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sparrow_1.0.3.zip && rm sparrow_1.0.3.tar.gz sparrow_1.0.3.zip
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100 3013k 100 3013k 0 0 2303k 0 0:00:01 0:00:01 --:--:-- 2305k
install for i386
* installing *source* package 'sparrow' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sparrow'
finding HTML links ... done
GeneSetDb-class html
SparrowResult-utilities html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/sparrow.buildbin-libdir/00LOCK-sparrow/00new/sparrow/help/geneSetDb.html
SparrowResult html
addGeneSetMetadata html
all.equal.GeneSetDb html
annotateGeneSetMembership html
calculateIndividualLogFC html
collectionMetadata html
combine-GeneSetDb-GeneSetDb-method html
combine-SparrowResult-SparrowResult-method
html
conform html
conversion html
convertIdentifiers html
corplot html
eigenWeightedMean html
examples html
failWith html
featureIdMap html
featureIds html
geneSet html
geneSetCollectionURLfunction html
geneSetSummaryByGenes html
geneSets html
geneSetsStats html
getKeggCollection html
getMSigCollection html
getPantherCollection html
getReactomeCollection html
goseq html
gsdScore html
gskey html
hasGeneSet html
hasGeneSetCollection html
incidenceMatrix html
iplot html
is.active html
logFC html
mgheatmap html
mgheatmap2 html
msg html
ora html
p.matrix html
randomGeneSetDb html
renameCollections html
renameRows html
results html
scale_rows html
scoreSingleSamples html
seas html
finding level-2 HTML links ... done
sparrow_methods html
species_info html
ssGSEA.normalize html
sub-GeneSetDb-ANY-ANY-ANY-method html
subset.GeneSetDb html
subsetByFeatures html
validateInputs html
volcanoPlot html
volcanoStatsTable html
zScore html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sparrow' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sparrow' as sparrow_1.0.3.zip
* DONE (sparrow)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'sparrow' successfully unpacked and MD5 sums checked