Eric Kort
| Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022) |
| git_url: https://git.bioconductor.org/packages/slinky |
| git_branch: RELEASE_3_14 |
| git_last_commit: b7c2f83 |
| git_last_commit_date: 2021-10-26 12:45:31 -0500 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-01-19 13:07:24 -0500 (Wed, 19 Jan 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4328 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4138 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the slinky package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/slinky.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1819/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Eric Kort
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: slinky |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:slinky.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings slinky_1.12.0.tar.gz |
| StartedAt: 2022-01-19 02:46:26 -0500 (Wed, 19 Jan 2022) |
| EndedAt: 2022-01-19 02:53:28 -0500 (Wed, 19 Jan 2022) |
| EllapsedTime: 422.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: slinky.Rcheck |
| Warnings: 1 |
##############################################################################
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:slinky.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings slinky_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/slinky.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'slinky/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'slinky' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'slinky' can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'slinky' is deprecated and will be removed from Bioconductor
See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/slinky.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rzs 8.59 0.66 10.25
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
rzs 10.31 0.34 11.7
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/slinky.Rcheck/00check.log'
for details.
slinky.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/slinky_1.12.0.tar.gz && rm -rf slinky.buildbin-libdir && mkdir slinky.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slinky.buildbin-libdir slinky_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL slinky_1.12.0.zip && rm slinky_1.12.0.tar.gz slinky_1.12.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
62 1173k 62 728k 0 0 1915k 0 --:--:-- --:--:-- --:--:-- 1918k
100 1173k 100 1173k 0 0 2306k 0 --:--:-- --:--:-- --:--:-- 2309k
install for i386
* installing *source* package 'slinky' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'slinky'
finding HTML links ... done
Slinky-class html
chDir html
closeAll html
clue html
clueCount html
clueInstances html
clueVehicle html
coerce html
colnames html
controls html
diffexp html
download html
get_metadata html
ks html
loadL1K html
finding level-2 HTML links ... done
metadata html
nrow html
readGCTX html
rownames html
rzs html
slinky-internal html
subset html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'slinky' is deprecated and will be removed from Bioconductor
version 3.15
** testing if installed package can be loaded from final location
Warning: Package 'slinky' is deprecated and will be removed from Bioconductor
version 3.15
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'slinky' ...
** testing if installed package can be loaded
Warning: Package 'slinky' is deprecated and will be removed from Bioconductor
version 3.15
* MD5 sums
packaged installation of 'slinky' as slinky_1.12.0.zip
* DONE (slinky)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'slinky' successfully unpacked and MD5 sums checked
|
slinky.Rcheck/tests_i386/testthat.Rout
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(slinky)
Warning message:
Package 'slinky' is deprecated and will be removed from Bioconductor
version 3.15
>
> test_check("slinky")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 45 ]
>
> proc.time()
user system elapsed
69.42 13.79 93.39
|
slinky.Rcheck/tests_x64/testthat.Rout
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(slinky)
Warning message:
Package 'slinky' is deprecated and will be removed from Bioconductor
version 3.15
>
> test_check("slinky")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 45 ]
>
> proc.time()
user system elapsed
70.00 16.06 96.64
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slinky.Rcheck/examples_i386/slinky-Ex.timings
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slinky.Rcheck/examples_x64/slinky-Ex.timings
|