| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:01 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the oligoClasses package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/oligoClasses.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1318/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| oligoClasses 1.56.0 (landing page) Benilton Carvalho
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: oligoClasses |
| Version: 1.56.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/oligoClasses_1.56.0.tar.gz && rm -rf oligoClasses.buildbin-libdir && mkdir oligoClasses.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oligoClasses.buildbin-libdir oligoClasses_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL oligoClasses_1.56.0.zip && rm oligoClasses_1.56.0.tar.gz oligoClasses_1.56.0.zip |
| StartedAt: 2022-04-12 05:32:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:35:19 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 180.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/oligoClasses_1.56.0.tar.gz && rm -rf oligoClasses.buildbin-libdir && mkdir oligoClasses.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oligoClasses.buildbin-libdir oligoClasses_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL oligoClasses_1.56.0.zip && rm oligoClasses_1.56.0.tar.gz oligoClasses_1.56.0.zip
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install for i386
* installing *source* package 'oligoClasses' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'oligoClasses'
finding HTML links ... done
AlleleSet-class html
finding level-2 HTML links ... done
AlleleSet-methods html
AssayData-methods html
AssayDataList html
BeadStudioSet-class html
BeadStudioSetList-class html
CNSet-class html
ClassesNotExported html
CopyNumberSet-class html
CopyNumberSet-methods html
DBPDInfo-class html
FeatureSetExtensions-class html
GRanges-methods html
GenomeAnnotatedDataFrame-class html
GenomeAnnotatedDataFrameFrom-methods html
SnpSet-methods html
SnpSet2-class html
SnpSuperSet-class html
SummarizedExperiment-methods html
affyPlatforms html
annotationPackages html
assayDataList-methods html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/oligoClasses.buildbin-libdir/00LOCK-oligoClasses/00new/oligoClasses/help/assayDataList.html
batch html
batchStatistics html
celfileDate html
celfileName html
checkExists html
checkOrder html
chromosome-methods html
chromosome2integer html
clusterOpts html
clusterOptsDeprecated html
createFF html
data-efsExample html
data-scqsExample html
data-sfsExample html
data-sqsExample html
db html
defunct html
exprs-methods html
featureDataList-methods html
ff_matrix html
ff_or_matrix-class html
ffdf html
fileConnections html
flags html
gSet-class html
gSetList-class html
generics html
genomeBuild html
geometry-methods html
getBar html
getSequenceLengths html
i2p_p2i html
integerMatrix html
is.ffmatrix html
isPackageLoaded html
isSnp-methods html
kind html
largeObjects html
ldOpts html
length-methods html
library2 html
list.celfiles html
locusLevelData html
makeFeatureGRanges html
manufacturer-methods html
ocLapply html
oligoSetExample html
oligoSnpSet-methods html
parStatus html
pdPkgFromBioC html
platform-methods html
pmFragmentLength-methods html
position-methods html
requireAnnotation html
requireClusterPkgSetDeprecated html
sampleNames-methods html
splitVec html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'oligoClasses' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'oligoClasses' as oligoClasses_1.56.0.zip
* DONE (oligoClasses)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'oligoClasses' successfully unpacked and MD5 sums checked