| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:52 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the metaseqR2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1106/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metaseqR2 1.6.1 (landing page) Panagiotis Moulos
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: metaseqR2 |
| Version: 1.6.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metaseqR2_1.6.1.tar.gz && rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR2.buildbin-libdir metaseqR2_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metaseqR2_1.6.1.zip && rm metaseqR2_1.6.1.tar.gz metaseqR2_1.6.1.zip |
| StartedAt: 2022-04-12 07:35:36 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:38:46 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 189.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metaseqR2_1.6.1.tar.gz && rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR2.buildbin-libdir metaseqR2_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metaseqR2_1.6.1.zip && rm metaseqR2_1.6.1.tar.gz metaseqR2_1.6.1.zip
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100 2115k 100 2115k 0 0 1719k 0 0:00:01 0:00:01 --:--:-- 1720k
install for i386
* installing *source* package 'metaseqR2' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metaseqR2.dll tmp.def pval.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metaseqR2.buildbin-libdir/00LOCK-metaseqR2/00new/metaseqR2/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metaseqR2'
finding HTML links ... done
buildAnnotationDatabase html
buildCustomAnnotation html
combineBonferroni html
combineHarmonic html
combineMaxp html
combineMinp html
combineSimes html
combineWeight html
createSignalTracks html
diagplotAvgFtd html
diagplotBoxplot html
diagplotCor html
diagplotDeHeatmap html
diagplotEdaseq html
diagplotFiltered html
diagplotFtd html
diagplotMds html
diagplotNoiseq html
diagplotPairs html
diagplotRoc html
diagplotVenn html
diagplotVolcano html
downsampleCounts html
estimateAufcWeights html
estimateSimParams html
getAnnotation html
getDefaults html
getInstalledAnnotations html
getWeights html
hg19pvalues html
importCustomAnnotation html
libsizeListMm9 html
loadAnnotation html
makeSimDataSd html
makeSimDataTcc html
metaTest html
metaseqr2 html
finding level-2 HTML links ... done
metaseqrPlot html
mm9GeneCounts html
normalizeAbsseq html
normalizeDeseq html
normalizeDeseq2 html
normalizeDss html
normalizeEdaseq html
normalizeEdger html
normalizeNbpseq html
normalizeNoiseq html
read2count html
readTargets html
sampleListMm9 html
statAbsseq html
statBayseq html
statDeseq html
statDeseq2 html
statDss html
statEdger html
statLimma html
statNbpseq html
statNoiseq html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metaseqR2' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metaseqR2.dll tmp.def pval.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metaseqR2.buildbin-libdir/metaseqR2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaseqR2' as metaseqR2_1.6.1.zip
* DONE (metaseqR2)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'metaseqR2' successfully unpacked and MD5 sums checked