Altuna Akalin
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/genomation |
| git_branch: RELEASE_3_14 |
| git_last_commit: b2f8d07 |
| git_last_commit_date: 2021-10-26 12:17:54 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:37 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the genomation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genomation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 744/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| genomation 1.26.0 (landing page) Altuna Akalin
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: genomation |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/genomation_1.26.0.tar.gz && rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomation.buildbin-libdir genomation_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL genomation_1.26.0.zip && rm genomation_1.26.0.tar.gz genomation_1.26.0.zip |
| StartedAt: 2022-04-12 06:29:16 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:32:54 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 218.1 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/genomation_1.26.0.tar.gz && rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomation.buildbin-libdir genomation_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL genomation_1.26.0.zip && rm genomation_1.26.0.tar.gz genomation_1.26.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
21 4098k 21 868k 0 0 1051k 0 0:00:03 --:--:-- 0:00:03 1051k
66 4098k 66 2719k 0 0 1507k 0 0:00:02 0:00:01 0:00:01 1507k
100 4098k 100 4098k 0 0 1740k 0 0:00:02 0:00:02 --:--:-- 1741k
install for i386
* installing *source* package 'genomation' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binSum.cpp -o binSum.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o binSum.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/genomation.buildbin-libdir/00LOCK-genomation/00new/genomation/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** help
*** installing help indices
converting help for package 'genomation'
finding HTML links ... done
AnnotationByFeature-class html
AnnotationByGeneParts-class html
AnnotationByGeneParts-methods html
Max_c html
Mean_c html
Median_c html
Min_c html
Ops-ScoreMatrix-ScoreMatrix-method html
Ops-ScoreMatrixList-ScoreMatrixList-method
html
Ops-ScoreMatrixList-numeric-method html
Ops-numeric-ScoreMatrixList-method html
RandomEnrichment-class html
ScoreMatrix-class html
ScoreMatrix-methods html
ScoreMatrixBin-methods html
ScoreMatrixList-class html
ScoreMatrixList-methods html
Sum_c html
annotatGrWithGeneParts html
annotateWithFeature-methods html
annotateWithFeatureFlank-methods html
annotateWithFeatures-methods html
annotateWithGeneParts-methods html
finding level-2 HTML links ... done
bed12ToExons html
bed12ToIntrons html
binMatrix-methods html
binMax html
binMean html
binMedian html
binMin html
binSum html
binner html
c.ScoreMatrix html
c.ScoreMatrixList html
cage html
calculateOverlapSignificance-methods html
checkBedValidity html
checkClass html
compressedAndUrl2temp html
constrainRanges html
convertBed2Exons-methods html
convertBed2Introns-methods html
convertBedDf-methods html
cpgi html
detectUCSCheader html
distance2NearestFeature html
enrichmentMatrix-ScoreMatrix-method html
enrichmentMatrix-ScoreMatrixList-ScoreMatrix-method
html
enrichmentMatrix-ScoreMatrixList-method
html
file.ext html
findFeatureComb-methods html
galpTo2Ranges html
genes html
getColors html
getFeatsWithTargetsStats-methods html
getFlanks-methods html
getMembers-methods html
getRandomEnrichment-methods html
getTargetAnnotationStats-methods html
gffToGRanges html
heatMatrix html
heatMeta html
heatTargetAnnotation-methods html
intersectScoreMatrixList-methods html
listSliceMax html
listSliceMean html
listSliceMedian html
listSliceMin html
listSliceSum html
multiHeatMatrix html
orderBy-methods html
patternMatrix-methods html
plotMeta html
plotTargetAnnotation-methods html
promoters html
randomizeFeature-methods html
read.zip html
readBam html
readBed html
readBigWig html
readBroadPeak html
readFeatureFlank-methods html
readGeneric html
readNarrowPeak html
readTableFast html
readTranscriptFeatures-methods html
scaleScoreMatrix-methods html
scaleScoreMatrixList html
show-methods html
sub-ScoreMatrix-ANY-ANY-ANY-method html
sub-ScoreMatrixList-ANY-ANY-ANY-method
html
target.type html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'genomation' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binSum.cpp -o binSum.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o binSum.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/genomation.buildbin-libdir/genomation/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
* MD5 sums
packaged installation of 'genomation' as genomation_1.26.0.zip
* DONE (genomation)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'genomation' successfully unpacked and MD5 sums checked