Back to Multiple platform build/check report for BioC 3.14
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:29 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for dualKS on tokay2


To the developers/maintainers of the dualKS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dualKS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 549/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dualKS 1.54.0  (landing page)
Eric J. Kort
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/dualKS
git_branch: RELEASE_3_14
git_last_commit: a78fb68
git_last_commit_date: 2021-10-26 12:12:06 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: dualKS
Version: 1.54.0
Command: chmod a+r dualKS -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dualKS
StartedAt: 2022-04-12 09:48:00 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 09:48:17 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 16.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r dualKS -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dualKS
###
##############################################################################
##############################################################################


* checking for file 'dualKS/DESCRIPTION' ... OK
* preparing 'dualKS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'dualKS.rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: affy
Warning: Package 'dualKS' is deprecated and will be removed from
  Bioconductor version 3.15
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(eset) == "matrix") { :
  the condition has length > 1 and only the first element will be used

Error: processing vignette 'dualKS.rnw' failed with diagnostics:
 chunk 22 
Error in eval(expr, .GlobalEnv) : object 'pv.f' not found

--- failed re-building 'dualKS.rnw'

SUMMARY: processing the following file failed:
  'dualKS.rnw'

Error: Vignette re-building failed.
Execution halted