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This page was generated on 2022-04-13 12:07:53 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for densvis on machv2


To the developers/maintainers of the densvis package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/densvis.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 486/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
densvis 1.4.0  (landing page)
Alan O'Callaghan
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/densvis
git_branch: RELEASE_3_14
git_last_commit: 75f5aa0
git_last_commit_date: 2021-10-26 13:04:35 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: densvis
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL densvis
StartedAt: 2022-04-12 03:17:40 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 03:18:20 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 40.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL densvis
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘densvis’ ...
** using non-staged installation via StagedInstall field
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c densne.cpp -o densne.o
densne.cpp:181:24: warning: variable 'row_P' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized]
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:201:33: note: uninitialized use occurs here
    computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift);
                                ^~~~~
densne.cpp:181:24: note: remove the condition if it is always true
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:154:35: note: initialize the variable 'row_P' to silence this warning
    double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D;
                                  ^
                                   = nullptr
densne.cpp:181:24: warning: variable 'col_P' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized]
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:201:40: note: uninitialized use occurs here
    computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift);
                                       ^~~~~
densne.cpp:181:24: note: remove the condition if it is always true
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:154:56: note: initialize the variable 'col_P' to silence this warning
    double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D;
                                                       ^
                                                        = nullptr
densne.cpp:181:24: warning: variable 'val_P' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized]
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:201:47: note: uninitialized use occurs here
    computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift);
                                              ^~~~~
densne.cpp:181:24: note: remove the condition if it is always true
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:154:71: note: initialize the variable 'val_P' to silence this warning
    double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D;
                                                                      ^
                                                                       = nullptr
densne.cpp:181:24: warning: variable 'val_D' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized]
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:201:54: note: uninitialized use occurs here
    computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift);
                                                     ^~~~~
densne.cpp:181:24: note: remove the condition if it is always true
        for(int i = 0; i < N * N; i++) P[i] /= sum_P;
                       ^~~~~~~~~
densne.cpp:154:86: note: initialize the variable 'val_D' to silence this warning
    double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D;
                                                                                     ^
                                                                                      = nullptr
4 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c densvis.cpp -o densvis.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c sptree.cpp -o sptree.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o densvis.so RcppExports.o densne.o densvis.o sptree.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/densvis/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (densvis)