| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:22 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the compEpiTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/compEpiTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 379/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| compEpiTools 1.28.0 (landing page) Kamal Kishore
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: compEpiTools |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/compEpiTools_1.28.0.tar.gz && rm -rf compEpiTools.buildbin-libdir && mkdir compEpiTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compEpiTools.buildbin-libdir compEpiTools_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL compEpiTools_1.28.0.zip && rm compEpiTools_1.28.0.tar.gz compEpiTools_1.28.0.zip |
| StartedAt: 2022-04-12 07:19:48 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:21:24 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 95.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/compEpiTools_1.28.0.tar.gz && rm -rf compEpiTools.buildbin-libdir && mkdir compEpiTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compEpiTools.buildbin-libdir compEpiTools_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL compEpiTools_1.28.0.zip && rm compEpiTools_1.28.0.tar.gz compEpiTools_1.28.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
10 2064k 10 216k 0 0 811k 0 0:00:02 --:--:-- 0:00:02 812k
100 2064k 100 2064k 0 0 1778k 0 0:00:01 0:00:01 --:--:-- 1780k
install for i386
* installing *source* package 'compEpiTools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
** help
*** installing help indices
converting help for package 'compEpiTools'
finding HTML links ... done
GR2fasta-methods html
GRanges2ucsc-methods html
GRangesInPromoters-methods html
GRannotate-methods html
GRannotateSimple html
GRbaseCoverage-methods html
GRcoverage-methods html
GRcoverageSummit-methods html
GRenrichment-methods html
GRmidpoint-methods html
GRsetwidth html
TSS html
compEpiTools-package html
countOverlapsInBins-methods html
distanceFromTSS-methods html
enhancers html
findLncRNA html
getPromoterClass-methods html
finding level-2 HTML links ... done
heatmapData html
heatmapPlot html
makeGtfFromDb html
matchEnhancers html
overlapOfGRanges-methods html
palette2d html
plotStallingIndex html
simplifyGOterms html
stallingIndex html
topGOres html
ucsc2GRanges html
unionMaxScore-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
** testing if installed package can be loaded from final location
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'compEpiTools' ...
** testing if installed package can be loaded
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
* MD5 sums
packaged installation of 'compEpiTools' as compEpiTools_1.28.0.zip
* DONE (compEpiTools)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'compEpiTools' successfully unpacked and MD5 sums checked