Zuguang Gu
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/cola |
| git_branch: RELEASE_3_14 |
| git_last_commit: 236148e |
| git_last_commit_date: 2021-10-26 12:49:03 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:22 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the cola package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cola.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 373/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cola 2.0.0 (landing page) Zuguang Gu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cola |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cola_2.0.0.tar.gz && rm -rf cola.buildbin-libdir && mkdir cola.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cola.buildbin-libdir cola_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cola_2.0.0.zip && rm cola_2.0.0.tar.gz cola_2.0.0.zip |
| StartedAt: 2022-04-12 05:24:06 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:31:28 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 442.1 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cola_2.0.0.tar.gz && rm -rf cola.buildbin-libdir && mkdir cola.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cola.buildbin-libdir cola_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cola_2.0.0.zip && rm cola_2.0.0.tar.gz cola_2.0.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 10.7M 0 1136 0 0 13744 0 0:13:40 --:--:-- 0:13:40 13686
20 10.7M 20 2233k 0 0 2057k 0 0:00:05 0:00:01 0:00:04 2058k
50 10.7M 50 5531k 0 0 2647k 0 0:00:04 0:00:02 0:00:02 2646k
88 10.7M 88 9759k 0 0 3156k 0 0:00:03 0:00:03 --:--:-- 3156k
100 10.7M 100 10.7M 0 0 3284k 0 0:00:03 0:00:03 --:--:-- 3284k
install for i386
* installing *source* package 'cola' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c atc.cpp -o atc.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pdist.cpp -o pdist.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o atc.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/cola.buildbin-libdir/00LOCK-cola/00new/cola/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cola'
finding HTML links ... done
ATC html
ATC_approx html
ConsensusPartition-class html
ConsensusPartitionList-class html
DownSamplingConsensusPartition-class html
Extract.ConsensusPartitionList html
Extract.HierarchicalPartition html
ExtractExtract.ConsensusPartitionList html
ExtractExtract.HierarchicalPartition html
FCC html
HierarchicalPartition-class html
PAC html
aPAC html
adjust_matrix html
adjust_outlier html
all_leaves-HierarchicalPartition-method
html
all_nodes-HierarchicalPartition-method
html
all_partition_methods html
all_top_value_methods html
cola html
cola_opt html
cola_report-ConsensusPartition-method html
cola_report-ConsensusPartitionList-method
html
cola_report-HierarchicalPartition-method
html
cola_report-dispatch html
cola_rl html
collect_classes-ConsensusPartition-method
html
collect_classes-ConsensusPartitionList-method
html
collect_classes-HierarchicalPartition-method
html
collect_classes-dispatch html
collect_plots-ConsensusPartition-method
html
collect_plots-ConsensusPartitionList-method
html
collect_plots-dispatch html
collect_stats-ConsensusPartition-method
html
collect_stats-ConsensusPartitionList-method
html
collect_stats-dispatch html
colnames-ConsensusPartition-method html
colnames-ConsensusPartitionList-method
html
colnames-DownSamplingConsensusPartition-method
html
colnames-HierarchicalPartition-method html
colnames-dispatch html
compare_partitions-ConsensusPartition-method
html
compare_signatures-ConsensusPartition-method
html
compare_signatures-HierarchicalPartition-method
html
compare_signatures-dispatch html
concordance html
config_ATC html
consensus_heatmap-ConsensusPartition-method
html
consensus_partition html
consensus_partition_by_down_sampling html
correspond_between_rankings html
correspond_between_two_rankings html
david_enrichment html
dim.ConsensusPartition html
dim.ConsensusPartitionList html
dim.DownSamplingConsensusPartition html
dim.HierarchicalPartition html
dimension_reduction-ConsensusPartition-method
html
dimension_reduction-DownSamplingConsensusPartition-method
html
dimension_reduction-HierarchicalPartition-method
html
dimension_reduction-dispatch html
dimension_reduction-matrix-method html
find_best_km html
functional_enrichment-ANY-method html
functional_enrichment-ConsensusPartition-method
html
functional_enrichment-ConsensusPartitionList-method
html
functional_enrichment-HierarchicalPartition-method
html
functional_enrichment-dispatch html
get_anno-ConsensusPartition-method html
get_anno-ConsensusPartitionList-method
html
get_anno-DownSamplingConsensusPartition-method
html
get_anno-HierarchicalPartition-method html
get_anno-dispatch html
get_anno_col-ConsensusPartition-method
html
get_anno_col-ConsensusPartitionList-method
html
get_anno_col-HierarchicalPartition-method
html
get_anno_col-dispatch html
get_children_nodes-HierarchicalPartition-method
html
get_classes-ConsensusPartition-method html
get_classes-ConsensusPartitionList-method
html
get_classes-DownSamplingConsensusPartition-method
html
get_classes-HierarchicalPartition-method
html
get_classes-dispatch html
get_consensus-ConsensusPartition-method
html
get_matrix-ConsensusPartition-method html
get_matrix-ConsensusPartitionList-method
html
get_matrix-HierarchicalPartition-method
html
get_matrix-dispatch html
get_membership-ConsensusPartition-method
html
get_membership-ConsensusPartitionList-method
html
get_membership-dispatch html
get_param-ConsensusPartition-method html
get_signatures-ConsensusPartition-method
html
get_signatures-DownSamplingConsensusPartition-method
html
get_signatures-HierarchicalPartition-method
html
get_signatures-dispatch html
get_stats-ConsensusPartition-method html
get_stats-ConsensusPartitionList-method
html
get_stats-dispatch html
golub_cola html
golub_cola_ds html
golub_cola_rh html
hierarchical_partition html
is_best_k-ConsensusPartition-method html
is_best_k-ConsensusPartitionList-method
html
is_best_k-dispatch html
is_leaf_node-HierarchicalPartition-method
html
is_stable_k-ConsensusPartition-method html
is_stable_k-ConsensusPartitionList-method
html
is_stable_k-dispatch html
knee_finder2 html
knitr_add_tab_item html
knitr_insert_tabs html
map_to_entrez_id html
max_depth-HierarchicalPartition-method
html
membership_heatmap-ConsensusPartition-method
html
merge_node-HierarchicalPartition-method
html
merge_node_param html
ncol-ConsensusPartition-method html
ncol-ConsensusPartitionList-method html
ncol-DownSamplingConsensusPartition-method
html
ncol-HierarchicalPartition-method html
ncol-dispatch html
node_info-HierarchicalPartition-method
html
node_level-HierarchicalPartition-method
html
nrow-ConsensusPartition-method html
nrow-ConsensusPartitionList-method html
nrow-HierarchicalPartition-method html
nrow-dispatch html
plot_ecdf-ConsensusPartition-method html
predict_classes-ConsensusPartition-method
html
finding level-2 HTML links ... done
predict_classes-dispatch html
predict_classes-matrix-method html
print.hc_table_suggest_best_k html
recalc_stats html
register_NMF html
register_SOM html
register_partition_methods html
register_top_value_methods html
relabel_class html
remove_partition_methods html
remove_top_value_methods html
rownames-ConsensusPartition-method html
rownames-ConsensusPartitionList-method
html
rownames-HierarchicalPartition-method html
rownames-dispatch html
run_all_consensus_partition_methods html
select_partition_number-ConsensusPartition-method
html
show-ConsensusPartition-method html
show-ConsensusPartitionList-method html
show-DownSamplingConsensusPartition-method
html
show-HierarchicalPartition-method html
show-dispatch html
split_node-HierarchicalPartition-method
html
suggest_best_k-ConsensusPartition-method
html
suggest_best_k-ConsensusPartitionList-method
html
suggest_best_k-HierarchicalPartition-method
html
suggest_best_k-dispatch html
test_between_factors html
test_to_known_factors-ConsensusPartition-method
html
test_to_known_factors-ConsensusPartitionList-method
html
test_to_known_factors-DownSamplingConsensusPartition-method
html
test_to_known_factors-HierarchicalPartition-method
html
test_to_known_factors-dispatch html
top_elements_overlap html
top_rows_heatmap-ConsensusPartition-method
html
top_rows_heatmap-ConsensusPartitionList-method
html
top_rows_heatmap-HierarchicalPartition-method
html
top_rows_heatmap-dispatch html
top_rows_heatmap-matrix-method html
top_rows_overlap-ConsensusPartitionList-method
html
top_rows_overlap-HierarchicalPartition-method
html
top_rows_overlap-dispatch html
top_rows_overlap-matrix-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cola' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c atc.cpp -o atc.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pdist.cpp -o pdist.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o atc.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/cola.buildbin-libdir/cola/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cola' as cola_2.0.0.zip
* DONE (cola)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'cola' successfully unpacked and MD5 sums checked