Markus List
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/SPONGE |
| git_branch: RELEASE_3_14 |
| git_last_commit: 0e56a73 |
| git_last_commit_date: 2022-04-07 03:39:39 -0400 (Thu, 07 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:25 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SPONGE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPONGE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1867/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPONGE 1.16.1 (landing page) Markus List
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: SPONGE |
| Version: 1.16.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SPONGE_1.16.1.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.16.1.zip && rm SPONGE_1.16.1.tar.gz SPONGE_1.16.1.zip |
| StartedAt: 2022-04-12 04:39:36 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:41:12 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 95.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SPONGE_1.16.1.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.16.1.zip && rm SPONGE_1.16.1.tar.gz SPONGE_1.16.1.zip
###
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29 4101k 29 1203k 0 0 1197k 0 0:00:03 0:00:01 0:00:02 1198k
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100 4101k 100 4101k 0 0 1839k 0 0:00:02 0:00:02 --:--:-- 1840k
install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SPONGE'
finding HTML links ... done
ceRNA_interactions html
check_and_convert_expression_data html
fn_elasticnet html
fn_gene_miRNA_F_test html
fn_get_model_coef html
fn_get_rss html
fn_get_shared_miRNAs html
gene_expr html
genes_pairwise_combinations html
mir_expr html
mir_interactions html
mircode_ensg html
mircode_symbol html
precomputed_cov_matrices html
precomputed_null_model html
sample_zero_mscor_cov html
sample_zero_mscor_data html
sponge html
sponge_build_null_model html
sponge_compute_p_values html
sponge_edge_centralities html
sponge_gene_miRNA_interaction_filter html
sponge_network html
sponge_node_centralities html
sponge_plot_network html
sponge_plot_network_centralities html
sponge_plot_simulation_results html
sponge_run_benchmark html
sponge_subsampling html
targetscan_ensg html
targetscan_symbol html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md'
* installing *source* package 'SPONGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SPONGE' as SPONGE_1.16.1.zip
* DONE (SPONGE)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SPONGE' successfully unpacked and MD5 sums checked