Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:49 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SMITE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SMITE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1823/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SMITE 1.22.0 (landing page) Neil Ari Wijetunga
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SMITE |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SMITE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SMITE_1.22.0.tar.gz |
StartedAt: 2022-04-12 18:44:10 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 18:50:45 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 395.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SMITE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SMITE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SMITE_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/SMITE.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SMITE/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SMITE’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SMITE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SMITE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SMITE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘SMITE’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SMITE)
SMITE.Rcheck/SMITE-Ex.timings
name | user | system | elapsed | |
Reactome.Symbol.Igraph | 0.228 | 0.016 | 0.244 | |
SMITE-package | 0.528 | 0.016 | 0.544 | |
addShadowText | 0.005 | 0.001 | 0.005 | |
annotateExpression | 0.249 | 0.009 | 0.257 | |
annotateModification | 0.001 | 0.001 | 0.001 | |
convertGeneIds | 2.535 | 0.199 | 2.737 | |
curated_expression | 0.220 | 0.005 | 0.226 | |
extractExpression | 0.254 | 0.007 | 0.260 | |
extractGOseq | 0.065 | 0.004 | 0.069 | |
extractModification | 2.487 | 0.034 | 2.526 | |
extractModules | 0.064 | 0.003 | 0.067 | |
extractScores | 0.067 | 0.003 | 0.070 | |
genes_for_conversiontest | 1.390 | 0.012 | 1.403 | |
hg19_gene_bed | 0.206 | 0.003 | 0.208 | |
highScores | 0.066 | 0.002 | 0.069 | |
histone_h3k4me1 | 0.086 | 0.003 | 0.090 | |
makePvalueAnnotation | 1.397 | 0.035 | 1.433 | |
makePvalueObject | 0.094 | 0.006 | 0.100 | |
methylationdata | 0.084 | 0.004 | 0.088 | |
normalizePval | 0.062 | 0.005 | 0.066 | |
plotCompareScores | 0.630 | 0.027 | 0.659 | |
plotDensityPval | 0.119 | 0.005 | 0.125 | |
plotModule | 0.060 | 0.003 | 0.062 | |
removeModification | 0.086 | 0.005 | 0.091 | |
runBioNet | 0.058 | 0.005 | 0.063 | |
runGOseq | 0.070 | 0.004 | 0.074 | |
runSpinglass | 0.761 | 0.046 | 0.808 | |
scorePval | 0.063 | 0.002 | 0.064 | |
stoufferTest | 0.002 | 0.001 | 0.002 | |
test_annotation_score_data | 0.101 | 0.005 | 0.106 | |